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Information for unigene UN17077
| FASTA Sequence |
| Unigene ID: UN17077 | Length: 1036 |
| SNP | GGGCTTTGATCAGGTTTCTTGTCTGAACAATGGCGAGTGTCTCTGTACGAACTCCAAGTTCCATTCAGCTTCTTCGTTCCTCTGTT
TCTCCTATGTGCTCGAAACCCTTGTTTCGATCATCATCTAGCTTTTCATCTTCCATCGTTTCTACTCCTTTCGCCAGATCAAAATC
CAATTCCCTAATCTCTAGACCTCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCACTGAGTACAGAGAAG
ATATCGGTGAGATACTCGGGGATGTCTCCATCTTTACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGAT
GGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTTGGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCG
GTTTGATGCGGCCGGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTATACTTGCATCTCGGTTACCTTTTC
CAATGGAATGTCTTTACGCCGATCCTGAGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACTTTCTTCAAC
CCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACGAGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAG
AAGCAGCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTGTATGGTCGAAAAGACGAAGGTACTGGTGATC
ATCCATCTCTAGATGATGTTCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTTAAAGTCTCTCTGGTCTG
GTTTAATGCTTACATCACTGTAATAATTGTAGCTATTAATACATGTTTTTACGACGTTAATAAATTATAAATAGTATACATTTGAA
CCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTATGTAATTGGAGTAATTTGTTTTGATTGTCTTTTTCAGTAGTGCG
TTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866692 hypothetical protein ARALYDRAFT_496819 [Arabidopsis lyrata subsp. lyrata] | 1079 | 2e-115 |
| NP_201385 peroxiredoxin (PRX)-like 2 domain-containing protein [Arabidopsis thaliana] | 1050 | 5e-112 |
| XP_002533575 conserved hypothetical protein [Ricinus communis] | 791 | 5e-082 |
| XP_002320012 predicted protein [Populus trichocarpa] | 789 | 8e-082 |
| ACU24130 unknown [Glycine max] | 781 | 7e-081 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU2 UPF0308 protein At2g37240, chloroplastic | 221 | 3e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L5Y8 Putative uncharacterized protein At5g65840 | 1050 | 3e-112 |
| B9T5Q6 Putative uncharacterized protein | 791 | 3e-082 |
| B9IBM8 Predicted protein | 789 | 6e-082 |
| C6TMI8 Putative uncharacterized protein | 781 | 5e-081 |
| A5BWD1 Putative uncharacterized protein | 776 | 2e-080 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G65840.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37240.1); Has 167 Blast hits to 165 proteins in 51 species: Archae - 0; Bacteria - 28; Metazoa - 51; Fungi - 13; Plants - 59; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | 1056 | 4e-115 |
| AT2G37240.1 INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65840.1); Has 252 Blast hits to 252 proteins in 46 species: Archae - 0; Bacteria - 20; Metazoa - 145; Fungi - 10; Plants - 66; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | 221 | 2e-018 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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