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Information for unigene UN17089
| FASTA Sequence |
| Unigene ID: UN17089 | Length: 1348 |
SSR | | GATTTGATTGAAGGGCTCTTTGCTATTAGGAAAGCGAAATTCCAGGGACATCCTGCTGTTCGTCCTGAGCTGGATCTTGTGGAAGA
AAAGTATTCGCATGATATATCTATTGATGACGAAATAAATCCTGAAACCTCTCTTGATGTTTTCAAACCTGATCCTGACTTCATTG
AGAACGAAAAGAAGTACGAGGGGCTGAAGAAGGAATTACTTGGTGAGGATGAGTCTGACGATGAAGATGGCTCTGATGCTAGTTCA
GAGGATAATGATGAGGATGAAGATGAGTCTGATGAAGAAGATGAAGAACAAATGAGGATAAGAGACGAGACAGAAACTAATCTTGT
CAATCTCAGGAGGACAATATACCTGACCATTATGTCTAGCGTTGATTTTGAGGAAGCAGGTCACAAGCTGCTTAAAATTAAACTTG
AACCAGGCCAAGAGATGGAGCTATGCATAATGCTTCTGGAATGTTGCTCTCAGGAGAGAACGTACCTGCGCTACTACGGTTTGTTG
GGTCAGCGTTTCTGTATGATCAACAAAATCCATCAGGAGAATTTTGAGAAGTGTTTTGTTCAGCAGTACTCCATGATCCACCGGCT
TGAGACGAACAAGCTGCGTAATGTGGCTAAGTTCTTCGCCCATTTACTGGGCACAGATGCACTTCCCTGGCATGTGCTTGCTTACA
TTCGGCTAACTGAGGAGGACACAACTTCGTCGTCCCGTATCTTCATTAAGATCCTTTTTCAGGAACTGTCAGAACATTTGGGGATT
AGGCTGCTTAATGAGAGGCTTCAGGATCCAACAATGCAGGAGTCACTTGAATCCATATTCCCTAAAGACAATCCAAAGAACACTAG
GTTTGCAATCAATTTCTTTACCTCCATTGGTCTTGGAGGCATCACAGAGAATCTGAGAGAGTACCTGAAGAACATGCCACGACTCA
TCATGCAACAACAGAAGCAAGTTGCAGAATCAGAATCAGACAGTTCTGGTTCCGAGTCTGATTCTGAGTCAGATTCATCGTCTTCT
TCTTCTTCTTCTTCTAGTTCGGATGAAAGCGACAGAGACAAGAGGAAGCGAAGAAGAAGATCTTGAGACGGTGCTCTTTGTTTTTC
AGCATCAACCACAATCCTCCAAGTTCTTTTGTTGGTTATTCAACTTGAATTTACATGCTCAGTCATGTGGTTCTGTTACTGCATAA
GCTCTGATGAACAAAAAGACTAGACCAGACCAGCTAAGACAATCAAAGGTTGTGAACAAAATGTTTTTTTCTTTGTTACTATGATT
GTTTTCAAGTTTTTTTTTGTTCAAACGTTTTCAAGTTTAAAATATAACCCTTTCAGTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_178208 pre-mRNA-splicing factor CWC22 [Arabidopsis thaliana] | 1752 | 3e-193 |
| XP_002887803 hypothetical protein ARALYDRAFT_895889 [Arabidopsis lyrata subsp. lyrata] | 1735 | 2e-191 |
| XP_002456069 hypothetical protein SORBIDRAFT_03g029810 [Sorghum bicolor] | 1536 | 3e-168 |
| XP_002323005 predicted protein [Populus trichocarpa] | 1526 | 4e-167 |
| XP_002265479 PREDICTED: hypothetical protein [Vitis vinifera] | 1520 | 2e-166 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q52KN9 Pre-mRNA-splicing factor CWC22 homolog | 1058 | 3e-114 |
| Q5ZKA3 Pre-mRNA-splicing factor CWC22 homolog | 1050 | 3e-113 |
| Q8C5N3 Pre-mRNA-splicing factor CWC22 homolog | 1032 | 4e-111 |
| Q08C72 Pre-mRNA-splicing factor CWC22 homolog | 1030 | 6e-111 |
| Q9HCG8 Pre-mRNA-splicing factor CWC22 homolog | 1029 | 8e-111 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SAG7 At1g80930/F23A5_23 | 1752 | 2e-193 |
| C5XF95 Putative uncharacterized protein Sb03g029810 | 1536 | 2e-168 |
| B9IGD9 Predicted protein | 1526 | 3e-167 |
| Q53Q54 Major Facilitator Superfamily protein, expressed | 1496 | 9e-164 |
| A2ZJG3 Putative uncharacterized protein | 1485 | 2e-162 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G80930.1 MIF4G domain-containing protein / MA3 domain-containing protein | 1753 | 8e-196 |
| AT1G52325.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 489 Blast hits to 294 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | 256 | 3e-022 |
| AT5G17930.1 binding / protein binding | 199 | 1e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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