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Information for unigene UN17108

FASTA Sequence
Unigene ID: UN17108Length: 1204  SNP
AAGAAGGAAAAGACATTTTTGAATAATTTATTTTAATCTATGTTATTATACAAAACCAAGAAATCGAAAAACTAGAACAACCATAT
TATTTTATCTGTGCATTAACGGGCCGACTCCAAAGAACCTATGCTTTTGTGTGTTTGTAAGTTAACAAAGATAAGATTATTGTACA
AAGTAATTAAACAGGAGCTTCTTTAATGACTATTGTTTTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATTAACAGAGGCTCA
TTCAAATCACTTGGAGTATCGTCGGTAACGTTCAGCTCGGGCGAGGCTGCAACCGCTCCGTTCATGTCACCTCCGTGCTCTGCTAA
TGCTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATCACGGATATTACAAGGCTTGAAATCAAGAACGCCC
ATCGGCCTATAGAGAACTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAGCATACACTAACGCAAGTGTT
ATTGGCATCATCCCTAGCCAAGAAGAAAGCAAGTATGGGCCCAGCGTTATCGGCGTTACAGATAAGAGGTAGTTCAACATGCTGAA
GGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAACCTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGAT
AGTCCTTCAGTTTTGCAACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGCTGCGCCTGAGCCAAGCGTAGCACCGACC
GAGTCCGCCACAAAACCAATTGGCAGTCCAAAAAGATAGCCACCACCGATCGTTAGAACAGAGGCAGGAACAGCCAAAACTGTTAG
AGGAATGTACGCAACAGCTAGGGCAAGAGGTCCCCAAGGCCCTAGATCTTGTTCAACCCATAACAAAAAATCCTTCAACAGCTGCT
CAACGGGGAGAAAATAGCAAGCTAAGACAATTGCAGCTACAAGGATCAAAAGAACTGAAATCCTGAGAGCAGATCCCCACGTTAAC
GCCATCGACTAGGCGACCGTTATTACGACGGGTATATCGCCTCCCTTAACTTCTTACACAGGTCTTGCTTGGATCTATGGATTGTT
CTCTCAGCCAAGCAAACAAAAAAAAACAGAAAAGCCGAATTCTCCGACAAAAAGGGAACACAGCAAAACGTAACCCTTAAGGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871857 hypothetical protein ARALYDRAFT_488790 [Arabidopsis lyrata subsp. lyrata]13168e-143
NP_197408 SNARE associated Golgi family protein [Arabidopsis thaliana]13095e-142
ACU23764 unknown [Glycine max]10282e-109
XP_002517154 conserved hypothetical protein [Ricinus communis]10149e-108
XP_002280327 PREDICTED: hypothetical protein [Vitis vinifera]10076e-107

Swiss-Prot top hits (Blast detail)Scoree value
Q55909 TVP38/TMEM64 family membrane protein slr03053281e-029
Q6YI46 Transmembrane protein 642366e-019
Q3U145 Transmembrane protein 642366e-019
A1A5V7 Transmembrane protein 41B1641e-010
A4II98 Transmembrane protein 41B1416e-008

TrEMBL top hits (Blast detail)Scoree value
Q6DBQ2 At5g1907013094e-142
C6TLH2 Putative uncharacterized protein10281e-109
B9RTT5 Putative uncharacterized protein10146e-108
B9HMD3 Predicted protein10048e-107
B9HY66 Predicted protein10031e-106

Arabidopsis top hits (Blast detail)Scoree value
AT5G19070.1 LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3029 Blast hits to 3029 proteins in 693 species: Archae - 10; Bacteria - 1724; Metazoa - 229; Fungi - 74; Plants - 161; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).13102e-144
AT1G03260.1 LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins in 730 species: Archae - 8; Bacteria - 1831; Metazoa - 239; Fungi - 87; Plants - 162; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink).9032e-097
AT1G22850.1 INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3098 Blast hits to 3098 proteins in 664 species: Archae - 6; Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants - 145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink).2706e-024
AT2G02370.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12450.1); Has 1745 Blast hits to 1745 proteins in 446 species: Archae - 2; Bacteria - 792; Metazoa - 108; Fungi - 97; Plants - 119; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).2008e-016
AT2G02370.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12450.1); Has 1745 Blast hits to 1745 proteins in 446 species: Archae - 2; Bacteria - 792; Metazoa - 108; Fungi - 97; Plants - 119; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).2008e-016

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  33%
 
74  44%
 
61  11%
 
121  11%

Unigene MembersMember information