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Information for unigene UN17136
| FASTA Sequence |
| Unigene ID: UN17136 | Length: 1007 |
| SNP | GAAAAGAGAGAGATATTAATCTTGATGAACTTGGTTCCTTTGTACACTGAAGATTTTTAAATTAGTTCATGGAGCTACAGCAATAC
CATATTGTTTCATGCTCACAAACCAAGAACTCTAAGATGCAAAACACACAGAGATATTAAGGTAGCATAAGATAGAGATGTATTAA
ATTCATAGGTCCGTCTTAAATCATCCGCTGAAGGTTTGGACAATAGTGTTGTGCCATGGGTCAGACAAGTGCTGCAACAGGTTCTC
AAATGGTCCCTTTCCAGTCACATTGTGTTGAATCACGAACCCTAAGAATGCCAACATCGCCAACCTCCCATTTGCAAGCTCTTTCT
CCTTAGCCTCGAGCGTAGGAGCGAAGTTAAGAGGGTTAAAGATTCCTCCGGGGTAACCAACTTCATTTGGAGGCAAGCTGTATTGC
TTGAAGATAGGGTCTTGGTTCACACTCCCTGGGTTCTTAATGTCCTGCCACCGTCTGATCTCAACGTAATGAAACAATATGAACTC
GATCACGAACAATGTCGATGATGATGCAAAATACTGCTCTTTCCCGGCATCGTACCACTCAGGAACGTTGATGATTCCGATCTTGG
TGAAAACTTCAGGCAAAAGCATCCCTGCGACGCCGAGCATGGCCCACCGTCCGTTGACAAGCTCTGCCTGGATGAACCACTTCAAG
TTCTCTGGATCCTCTGCCAGTCCCAATGGGTCAAACCCATTATCACCGGCAAGACTGCCGTTGAGATAACCAGGAGATGCCAAACC
GGGCAACCATTCTCCTTTCTTAGCTTCAACCTTGAACGAGGACGTCTTTGAGCCGATTGACTTAAACGACAATTCTCGGTTCAACC
TACCGGAAGAACCGGTGAGGAATCTTGGCTTTGAAGTGCATGGTCTGAATATCGAGGCCGAGGCTTGAGTAGTGACAGTGGCCATT
TCCCCTACAGAGCTTGGATACAGGAAGGTAGAGAATGGATTGGAATCAAGAAGAGATTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33651 unnamed protein product [Thellungiella halophila] | 1291 | 5e-140 |
| NP_190331 chlorophyll a-b binding protein 4 [Arabidopsis thaliana] | 1252 | 2e-135 |
| XP_002877563 chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata] | 1236 | 1e-133 |
| XP_002514741 chlorophyll A/B binding protein, putative [Ricinus communis] | 1226 | 2e-132 |
| ACJ85068 unknown [Medicago truncatula] | 1198 | 3e-129 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P27521 Chlorophyll a-b binding protein 4, chloroplastic | 1252 | 7e-137 |
| Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic | 1160 | 3e-126 |
| Q36718 Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) | 822 | 5e-087 |
| P13869 Chlorophyll a-b binding protein, chloroplastic | 588 | 7e-060 |
| P10708 Chlorophyll a-b binding protein 7, chloroplastic | 584 | 2e-059 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RLX2 Chlorophyll A/B binding protein, putative | 1226 | 1e-132 |
| B7FJY9 Putative uncharacterized protein | 1198 | 2e-129 |
| B9N4C4 Light-harvesting complex I protein Lhca4 | 1190 | 2e-128 |
| A9PIX4 Putative uncharacterized protein | 1187 | 4e-128 |
| Q7M1K8 Chlorophyll a/b-binding protein (cab-12) | 1176 | 7e-127 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G47470.1 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding | 1252 | 6e-138 |
| AT3G61470.1 LHCA2; chlorophyll binding | 604 | 9e-063 |
| AT1G45474.1 LHCA5; pigment binding | 534 | 1e-054 |
| AT1G45474.2 LHCA5; pigment binding | 534 | 1e-054 |
| AT1G19150.1 LHCA6; chlorophyll binding | 530 | 3e-054 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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