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Information for unigene UN17146
FASTA Sequence |
Unigene ID: UN17146 | Length: 1351 |
| SNP | CAAGCTCTTCTCTCTGCTAGACTAAAGACCCCTTTTCCTTCTTTCTCCGGCGATATTTTTCCCAATCGATCAGATGGCGAAGGATC
CAGTTCGCGTTCTCGTCACTGGAGCTGCAGGACAAATCGGATACGCTCTAGTACCTATGATCGCAAGAGGAATCATGCTGGGTGCA
GATCAGCCTGTGATCCTCCACATGCTTGATATCCCTCCTGCTGCTGAAGCTTTGAACGGTGTCAAAATGGAGTTGATCGATGCTGC
TTTCCCTCTTCTCAAAGGTGTGGTGGCTACCACTGACGCCGTGGAAGGGTGTACTGGTGTGAACGTTGCAGTTATGGTTGGTGGTT
TCCCGAGGAAAGAAGGAATGGAGAGGAAGGATGTCATGTTCAAGAACGTTTCCATTTACAAGTCCCAAGCTGCTGCTTTGGAGAAG
CACGCCGCACCTAACTGCAAGGTCTTGGTTGTTGCAAACCCTGCAAACACCAACGCGTTGATCCTTAAGGAATTCGCACCGTCCAT
CCCCGAGAAGAACATCACTTGCTTGACGAGGCTTGACCACAACAGGGCCTTGGGACAGGTCTCTGAGAGGTTAAACGTGCCAGTCT
CTGATGTCAAGAACGTGATTATTTGGGGAAACCACTCGTCGAGCCAGTACCCAGATGTCAACCACGCTAGCGTCAAGACTTCTTCT
GGGGAGAAGCCAGTGCGTGAGCTTGTCAAGGACGACGAGTGGTTGAATGGAGAGTTCATCACAACCGTTCAACAACGTGGAGCTGC
TATTATCAAGGCCAGGAAGCTGTCTAGTGCACTCTCTGCTGCTAGCTCAGCTTGTGACCATATCCGTGATTGGGTCCTTGGAACTC
CCGAGGGCACATTTGTTTCAATGGGTGTGTACTCAGACGGATCATACAACGTTCCATCTGGACTTATCTACTCTTTCCCTGTAACC
TGCCGTAACGGAGAGTGGTCTATTGTCCAAGGTTTACCGATCGATGAAGTGTCGAGGAAGAAGATGGATTTGACAGCAGAGGAGTT
GAAGGAAGAGAAGGACCTTGCTTACTCATGCCTCTCTTAGACCGGTTTTTATCCTTGAAAGATGATAACGGAGCTTTGTTTCGAAT
AAGGATGCTTTGTTTATTAAAAATAAATACTTTGAATAACCTCATGAGGTTAGGAGCTGTACTTGTGTTTTCCAGTATTTTGAATC
TTTGATCTCTTTCAGTCTGGGCTTTTGGCCGAAGTGTGCGGGTTTTATTTCGTTTTTTTTGGTCAAACTGTCCAAGATACAGTACA
TGGTTCATCCATGGATTTCATTGATAGGAAAATTCTCATGGACTATTTAATCAACTTCTAT
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GenBank top hits (Blast detail) | Score | e value |
BAJ34213 unnamed protein product [Thellungiella halophila] | 1670 | 9e-184 |
XP_002865429 cytosolic malate dehydrogenase [Arabidopsis lyrata subsp. lyrata] | 1658 | 2e-182 |
XP_002892216 hypothetical protein ARALYDRAFT_470418 [Arabidopsis lyrata subsp. lyrata] | 1651 | 1e-181 |
NP_171936 malate dehydrogenase [Arabidopsis thaliana] | 1646 | 5e-181 |
AAM65532 cytosolic malate dehydrogenase [Arabidopsis thaliana] | 1627 | 8e-179 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P93819 Malate dehydrogenase, cytoplasmic 1 | 1646 | 2e-182 |
P57106 Malate dehydrogenase, cytoplasmic 2 | 1624 | 8e-180 |
Q08062 Malate dehydrogenase, cytoplasmic | 1586 | 2e-175 |
O48905 Malate dehydrogenase, cytoplasmic | 1550 | 3e-171 |
Q7XDC8 Malate dehydrogenase, cytoplasmic | 1546 | 9e-171 |
TrEMBL top hits (Blast detail) | Score | e value |
Q8LA78 Malate dehydrogenase | 1627 | 6e-179 |
Q2PYY8 Malate dehydrogenase | 1593 | 5e-175 |
C4IZW9 Malate dehydrogenase | 1586 | 3e-174 |
Q9FSF0 Malate dehydrogenase | 1586 | 3e-174 |
C5WYF2 Malate dehydrogenase | 1580 | 2e-173 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT1G04410.1 malate dehydrogenase, cytosolic, putative | 1647 | 1e-183 |
AT5G43330.1 malate dehydrogenase, cytosolic, putative | 1625 | 5e-181 |
AT5G56720.1 malate dehydrogenase, cytosolic, putative | 1293 | 2e-142 |
AT5G58330.2 malate dehydrogenase (NADP), chloroplast, putative | 598 | 6e-062 |
AT5G58330.1 malate dehydrogenase (NADP), chloroplast, putative | 598 | 6e-062 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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