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Information for unigene UN17148

FASTA Sequence
Unigene ID: UN17148Length: 816 SSRSNP
ACCCATCATTTCAAACACACCAAACAAAACAAACAAAACACAAAACCATTCTCCAAAACAGAGCATGAGAAACGGAGGACAAAGCC
AGAACAAGTTCTTGAGAATCATCTCAACACCTTTCAGAGCTTTAGGCAAAGCTTACGTGAGAAGCATCACCGGTTGTGCTTCTCGG
AGTCAGTATCCCTCCTCCTCCTCTTCCGTCTCCACTGCTTTTCCTAGAAGCAAGAGCTCATCCTCTGCCGCCTTCTCCTCATCCGC
ATCTACACGCAGAACAACTGATTTTGGGATTGATGATGACTACAGCGAGCTAGTGAGAGCAGCGTCGGTTAGGAGTTTAGGACACA
AGAATGAGATAGACATGTTTATACATGAGAAGGTGAAACAAGAGAAGCTGCAGCAGGAGATGCAGAAGAAGATGAAGTATGGAGGG
TTGCCGAAGAGCACGAGCGTAGGGATGGCGAGGATAGATGAAGATGAAGAAGGAGAGGAAGGATCTGTGAAACCGAAGACGACTAA
GAAAGTCTCTGAGCTTTTGTATCCTCGTAGCAAATCATATGCTGTTACTGGTAGCCCTAAGTTTTAGTGTTTTTGTTTCTCTCTCT
CTCTTTTTAATAGTAATTTGTGGATTGATTTTTGATATATTTTAGTTTTGATTTTTCTGCAACAAAGAAATAATGATAGAATTCGA
TAAACTGCTCTCGATTCAAACCCAAGTTTGGTTGATATTTGAAGTTCAGTACGTGTATATACGACCCATGTGTTTCAATGATTTTG
CATTTTTTATGTTAAGTTTTGAAGTAATTTATAATTTGTATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892549 hypothetical protein ARALYDRAFT_888272 [Arabidopsis lyrata subsp. lyrata]5971e-059
NP_563861 uncharacterized protein [Arabidopsis thaliana]5907e-059
XP_002888216 hypothetical protein ARALYDRAFT_475391 [Arabidopsis lyrata subsp. lyrata]4491e-042
NP_564733 uncharacterized protein [Arabidopsis thaliana]4482e-042
AAM61565 unknown [Arabidopsis thaliana]4437e-042

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SY56 At1g101405905e-059
Q9C647 At1g584204481e-042
Q8LF77 Putative uncharacterized protein4435e-042
B9R6Y1 Putative uncharacterized protein2178e-016
B9IBQ0 Predicted protein2008e-014

Arabidopsis top hits (Blast detail)Scoree value
AT1G10140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031279 (InterPro:IPR016972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58420.1); Has 38 Blast hits to 38 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).5903e-061
AT1G58420.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031279 (InterPro:IPR016972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10140.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4488e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  43%
 
92  29%
 
202  29%

Unigene MembersMember information