 |
Information for unigene UN17159
| FASTA Sequence |
| Unigene ID: UN17159 | Length: 1384 |
SSR | | GGACGGCGGCGCCTCCCCCTACAGAAGAGAGAGAGAGAGAGAGTCGGAAGAAGGAAACGGAGGGAGTGGAAAAAATGGCGGAGGAT
GAAGAACCACCGATGGCTGTTCAAATCCAACCAGATATTTCCGCCGTTAAGACCCTCTCTTTAGAGGAATCAAGGGACGCTGTTGG
TGTCACTGTCATCACTGGTTATCTCGGCGCCGGGAAGTCCACCCTTGTGAATTATATTCTGAACGGGAAACACGGGAAGAAAATAG
CGGTGATTTTGAACGAGTTTGGGGAAGAGATTGGAGTAGAGAGGGCTATGATTAACGAAGGTGAAGGAGGTGCTCTTGTTGAAGAA
TGGGTCGAGCTTGCTAATGGCTGTATTTGCTGCACTGTCAAGCACAGTCTTGTTCAAGCTCTCGAGCAGCTTGTTCTGAGGAAAGA
CAGGCTTGATCATATATTACTGGAGACAACAGGTTTAGCAAATCCGGCTCCTCTTGCTTCTATTCTTTGGTTGGATGACCAGTTAG
AATCAGAAGTCAAGCTTGACTGCATTGTTACTGTTGTGGATGCAAAGAACCTTCGTTTTCAGCTCAATGAGCGCCGTGACTCATCC
TCCTTTCCCGAGGCTTTTAATCAAATAGCATTTGCAGACACGGTGATAATGAACAAGGTTGACTTGATTTCTCAAGAGGAATCTTA
TGAACTGGAGAAGGAGATTCACTCCATCAACTCCCTCGCCAATGTCATCCGTTCTGTCAGGTGTCGAGTTGATTTATCCAACATAT
TAGAATGCCAAGCATATGATCTACCCATGCTAGTCGTCTTGAATCCCTGCTAGAGGCAAATAAATCATTAACGACAACGGATCTTC
ATGATAGTGGAGTGAGGACTCTATGCATCAGTGAACCTCGGCCTATTAACCTCGACAAGGTTCGTTTATGGCTTGAGGAAGTTCTG
TGGGATAAAAAACTTGACATGGATGTATATCGCTGCAAGGCTGTATTAAGCATTCAAAACTCAGACCAGCTGCATATATTGCAGGC
TGTTAAAGAGATATATGAGATAGTTCCAGCACGACAATGGAGTGAAGAAGAGAACAGAGTGAACAAAATTGTGTTTATAGGGCACA
AACTGGACGAAGAAGCTCTTAAAACCGGCTTAAGAGAGTGCACAACCTGAAGAAAAACCTTAGATGTTGCAGTGAAAACCAGATTG
GTCTAAACAGTTTTGTCTTTTGCCGATCTTGTACGAAGCTCTCTAGTCAATTGCTGAGTTGGGGTATTAGAGATTGTAATTTTACC
ATCTTAGTGTAATTTTACACTAGAATTTTATAGTTGATACTGTTTTACCGATATATTTGGTATTGTACTGACATTAGCCTTCATTT
TCCCTCAA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890653 hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata] | 1102 | 6e-118 |
| NP_173974 Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana] | 1100 | 1e-117 |
| BAD94941 hypothetical protein [Arabidopsis thaliana] | 1078 | 4e-115 |
| AAF98566 Contains similarity to cobW protein from Rhodobacter capsulatus gi|7448322 [Arabidopsis thaliana] | 1022 | 1e-108 |
| XP_002274691 PREDICTED: hypothetical protein [Vitis vinifera] | 919 | 1e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8VEH6 COBW domain-containing protein 1 | 558 | 3e-056 |
| Q9BRT8 COBW domain-containing protein 1 | 555 | 7e-056 |
| Q8IUF1 COBW domain-containing protein 2 | 550 | 3e-055 |
| Q99MB4 COBW domain-containing protein 1 | 546 | 8e-055 |
| Q5JTY5 COBW domain-containing protein 3 | 540 | 4e-054 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q500W8 At1g26520 | 1100 | 8e-118 |
| Q56WG0 Putative uncharacterized protein At1g26520 | 1078 | 3e-115 |
| Q9FZD7 T1K7.11 protein | 1022 | 8e-109 |
| B9REF7 Putative uncharacterized protein | 895 | 4e-094 |
| B9HID1 Predicted protein | 879 | 3e-092 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G26520.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor L, putative (TAIR:AT1G15730.1); Has 5407 Blast hits to 5334 proteins in 932 species: Archae - 52; Bacteria - 3259; Metazoa - 131; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 1659 (source: NCBI BLink). | 1100 | 4e-120 |
| AT1G15730.1 PRLI-interacting factor L, putative | 472 | 3e-047 |
| AT1G80480.1 PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) | 449 | 1e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
