RadishBase

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Information for unigene UN17161

FASTA Sequence

Unigene ID: UN17161	Length: 1155		SNP
GGATTATTCACAGAGCTTAACAAAAAAACGTCTCATCTAAAATCAAACCCAGAAGAAAATCAAAAGACGAGTGAAGAAAGATGGGG AACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATCAAAGAAACGTTTGGGAAGTTCGAAGATGTTCTAGAGCCTGG TTGCCATTTTCTCCCATGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCTCTCAGGCTTCAGCAGTTGGATGTTCGCTGCGAGA CTAAGACTAAGGACAATGTGTTTGTTAATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGATGCCTTCTAC AAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCTTTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGT CTTTGAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGCAATGTCTGCTTACGGTTTTGAGATTGTCCAAA CTCTCATCGTTGACATCGAGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCAAGGATGAGGTTGGCTGCG AACGAAAAGGCAGAGGCTGAGAAAATCCTCCAGATCAAGCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTCTGGTCTTGGTAT CGCCCGTCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGCGTCCTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAG ATGTGATGGACATGGTGCTTGTTACGCAGTACTTCGACACGATGAAGGAGATTGGCGCCAGTTCCAAATCCTCTGCTGTCTTCATT CCCCATGGACCAGGAGCTGTACGCGATGTGGCTACTCAGATCAGAGATGGGCTCCTTCAAGGCTCCTTTGCAGACCAGTCCTGAAA TATAGATAATGGACTGATATCATTATATGTTCTCTACTAAGCTTGCTGTGTGTTAAGACTTATGATCTCGTGTTGAGAAACTCTCA TGCTTTAGGTTTCTATATTTTTCGTTATTGTATTCCACGTATTTGGAGTGTGCAACCAAAAAATCGTAATTAATCAAATAATGTAT ATGTTGATCATGTTCAAATTTGCGAACACTCGTGACT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002864817 band 7 family protein [Arabidopsis lyrata subsp. lyrata]	1378	5e-150
NP_201080 Hypersensitive-induced response protein 1 [Arabidopsis thaliana]	1375	1e-149
XP_002272188 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]	1323	1e-143
XP_002272267 PREDICTED: hypothetical protein isoform 3 [Vitis vinifera]	1323	1e-143
CBI15272 unnamed protein product [Vitis vinifera]	1323	1e-143

Swiss-Prot top hits (Blast detail)	Score	e value
P16148 Protein PPLZ12	582	4e-059
P0AA55 Protein qmcA	172	1e-011
P0AA54 Protein qmcA	172	1e-011
P0AA53 Protein qmcA	172	1e-011
P0AA56 Protein qmcA	172	1e-011

TrEMBL top hits (Blast detail)	Score	e value
Q9FM19 Hypersensitive-induced response protein	1375	8e-150
A6YGE4 Hypersensitive-induced response protein	1322	1e-143
A2Y840 Putative uncharacterized protein	1300	4e-141
Q6L4S3 Os05g0591900 protein	1300	4e-141
B6TBQ1 Hypersensitive-induced response protein	1296	1e-140

Arabidopsis top hits (Blast detail)	Score	e value
AT5G62740.1 band 7 family protein	1375	4e-152
AT1G69840.1 band 7 family protein	1222	2e-134
AT1G69840.3 band 7 family protein	1222	2e-134
AT1G69840.4 band 7 family protein	1222	2e-134
AT1G69840.2 band 7 family protein	1222	2e-134

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			11%


10	5			28%


7	5			28%


9	4			22%


12	2			11%

Unigene Members	Member information