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Information for unigene UN17166
| FASTA Sequence |
| Unigene ID: UN17166 | Length: 1604 |
| SNP | AATTGAGTCTCAATGGGTTGCTCAAGAGTGGATCTATTGTTGGTCCATAGAAAGAACGTACAGATGAGAGAGTATCAGAAAGTCAG
GAATTTATCAAAGTCTAAAAGAAGCTGCCACGCCCATCATTTCACCATATTCTTTTTTTTGGTAGCTAAAAAAGTTCTAACATCCC
CAACAAACTAGCGCTAAAATAATTCTTTAAAAGAAAGAAAAACAAATACGACTCTGAAAACTTGTTGGATCCTTCATAATCTCCAC
CTTCTTCGGCTTAGAGCTCGTCATGGGCGGCATCATCCTTGTCTGAGGAGGCTTCTTCCTTGGTTTCCTCAGTTTTTGATTCAGTG
TCGGATTCATCTCCTTCATGGTCATCGTCCTCTTGTTCATCCTCAGCATCAGAATCAGCAGCGGGAGCATCCTTTGATTCCTCTTC
CTCTCTCTTCTTCTCAGCTTCGTCGAATGCTGCTTTCTCAGCATCCTTGAGCTTTCCCCAGGTTTCCTCAGCCAACTTCTTAGCGT
ACTCAGGGTCATCGCAGACTAAGACATTGTCGAACAATGATCCAGATTTCACCTGCCACAACTCTACTCCAACATACTTAAATTTG
AAGACATAGAGTTCTGGGTCATCCTTGAAGTCAGGGTTGTCAATCATTGGAGCCTTCCATTTGCCCTTGTAGTTAGGGTTCTTGAT
TTTCTTGGGCTTCCATTCACCGTTGTACTCGGGGTTGGGAATGGTAGGGGCAGTCCACTCACCATCTTCTTCATCATCCCAGTCCT
CAGGCTTCTTTGCATCAGCGTCTGGGATCTCCTTTGGGATGTCATCGTATCCAGCTGGCTTTGTGTCTTCAGGATCAGGAATGTAC
TCTTTGTCATCCCAGTCCTCAGGCTTCTTGGCGCTTGGATCCTTAATCTTCTTGGCTGGGAGGAGATCCCAGTCAGAGTAGAGGCT
ACCAGTTTGCTTCTCAACGTTATCGATAAGAATACTGTAAGTAGCATCTGGGCGGAGGATAAACGTGTAGACATGTGTGAGCTGAT
CAGTCTCACATGGAACCTCCTTCTTGATCAGATGGTTTTTTCCATTGTAGGTAAGGATAGCATGCACTTTCTTGGTGTCGTAGCCA
CAGATATCAGGACCAAACATGATGCTGTAAGGAGTGTCTCCACCGAATTTCTTCTGGTCAACATCACCACTGAGAAGCTTCATGTA
TCCACCACCACAGTCCAGCTTCTGCTCGTGCTTGACAGAGAATTGGAACACAAGGGTCTTGTCCTTGTTGCTGAACTCAGGGAACT
CAGCTGAAATGGCGTAGAATCTGTAGTCCTCGCTAGTCTGGATACCTTTGTCGTTAGCGTCACCAGACCAGTTGCCAGCTGTGTGG
CTCCATTCCCCAGCAGTGTTGTCATCTTTCTTCCAGTCAGATTTCACCCATCTGTTCTCCCATCCATCGTCGAATTTCTCCTCGAA
GATAACGCTAGCAGATGCGATCGCGACGAGGCCGATAAGGATCAGAGAGATGAAGTTAGGGTTTAGTTTCGCCATCGCTAGAAACT
CAGATCGCACCTTCCTCGAAAACAGTAAGATGCTACAAAAGCCTATAAGAAGATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_176030 calreticulin-1 [Arabidopsis thaliana] | 2089 | 3e-232 |
| AAN60341 unknown [Arabidopsis thaliana] | 2045 | 4e-227 |
| AAM63796 putative calcium-binding protein, calreticulin [Arabidopsis thaliana] | 2042 | 8e-227 |
| NP_172392 calreticulin-2 [Arabidopsis thaliana] | 2040 | 1e-226 |
| XP_002892492 calreticulin 2 [Arabidopsis lyrata subsp. lyrata] | 2040 | 1e-226 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8H792 Putative uncharacterized protein (Fragment) | 2045 | 2e-227 |
| Q8LC80 Putative calcium-binding protein, calreticulin | 2042 | 5e-227 |
| C0Z2C0 AT1G56340 protein | 1956 | 5e-217 |
| C4PB36 Calreticulin | 1931 | 4e-214 |
| A0A762 Calreticulin-1 | 1894 | 8e-210 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G56340.1 CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding | 2090 | 8e-235 |
| AT1G09210.1 calreticulin 2 (CRT2) | 2041 | 4e-229 |
| AT1G56340.2 CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding | 1928 | 5e-216 |
| AT1G08450.1 CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding | 1320 | 2e-145 |
| AT1G08450.2 CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding | 728 | 7e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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