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Information for unigene UN17186
| FASTA Sequence |
| Unigene ID: UN17186 | Length: 977 |
| SNP | GTCTCTCAATCTCTACTATCTTCTTCTTCTCTCCCCCGAGCTCCTCACCTGGTTGACTCAACAACGACTCTGCCGTTCCCTTTTAG
CAGCCATGACGACAACTTCTCCTTGCAGGACCATAAACGCTAATAATGCTGTCACCGCGCCGCCGTCGCCTTCGGGAATGATCTTC
CACGGCTGTCGTGATTTCGTTCCGATCGATAAGAGACTTGTCAAATCAAGCTCACGTGGATTGAATTTGCCGACGAAGAGATTGGC
TTGGAGCTTAAGTTCTCCGGGGAGGTCGCTCTCTTCTTCTCCCGTGGCGTCTAGTTCTACATCGGCGGCTGTGACATCGAATTCTT
CGAATCGATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTATACATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCT
CTTTTCGGTTCGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGGCAGACTCGTTTGTGCAGTACACTGTGAATCGCGGGAAGGT
GATTTTACTTCTGGTAGAAGCTATAGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTTACGAGCTTTTCA
TTAGCAACCTCACGACTTCAGAAACGATTTCACACGATAATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAG
CGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAAGCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTT
GTTCGACAAGAGCAGGAAAGTTGCTATAACTTCTGTCGCCGACTTGCTATGTATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTC
TCTTCTTGCTCTCTAGGCTCAATGGCTCACACTGAGCTAACAGCGTTGCCTTTAAACATATGAAACTTTGTATGATGTGTATAATG
TTTTAGTAAAATTTCACATTCTCTTTTGCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867942 hypothetical protein ARALYDRAFT_492923 [Arabidopsis lyrata subsp. lyrata] | 1007 | 4e-107 |
| NP_567583 uncharacterized protein [Arabidopsis thaliana] | 886 | 4e-093 |
| AAL06952 AT4g19390/T5K18_170 [Arabidopsis thaliana] | 877 | 5e-092 |
| CAA18626 putative protein [Arabidopsis thaliana] | 699 | 2e-071 |
| XP_002272494 PREDICTED: hypothetical protein [Vitis vinifera] | 644 | 5e-065 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94JM4 AT4g19390/T5K18_170 | 886 | 3e-093 |
| Q940D6 AT4g19390/T5K18_170 | 877 | 3e-092 |
| O65710 Putative uncharacterized protein AT4g19390 | 699 | 1e-071 |
| B9N0N9 Predicted protein (Fragment) | 602 | 3e-060 |
| B9S1S5 Putative uncharacterized protein | 568 | 2e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G19390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13720.1); Has 553 Blast hits to 553 proteins in 219 species: Archae - 18; Bacteria - 407; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | 1036 | 7e-113 |
| AT5G13720.1 LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19390.1); Has 294 Blast hits to 294 proteins in 98 species: Archae - 18; Bacteria - 168; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | 438 | 2e-043 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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