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Information for unigene UN17198

FASTA Sequence
Unigene ID: UN17198Length: 1260  SNP
GGGCCTCTCAAATTCACAACTTTGGCCTCTGTATTATTGTTTGCTTTCTTCTATGTCCACTTTCTCCTCTTTTTCTCCATTTCATA
CTTCCAAGCTTTTCTCTCACAAAGAGGACGAACAAAAAATGTATGCAGATTCAGGGTTAATGCCCCGTTACATGCAAACTTGTTCT
CCAGATATTCACCAATTTGAAGACCTCTTCAAATCATACAAGCTCTCGGATGAAGAAATGAGAAATGGTTTTGCTGAACGATCAAA
CCTACCTGAGTATGATATTGGAGAAGAAGGAGATCTCTTCAACGCTCCTGATTCAATTCTTGAAGAGCCAATCTTAACCGTTGATC
CGCTCTCAGCTGCCTTAACGATGATCTCTTGCGGGGAAGACTCTTCCCAAGGGCTTTGTGATCTTCCTGACCTCGATCTCGGGTCG
TTTCAGAGCGATCAGCAGCTTCTTGACAATGCCTTCTATGAATGCGAGCAAGATCTCATGATGAAATCAGCTACGATGGAGTCTCC
ACTATCTGAAGTTTTGGACGTCAAGAACATCTCTGTCGTGACTACGGGGATCAACGAGAGCCAGGATATGCAGAAGAGCGTAAGCT
CGGGGAACCTGCGCTCTATGGATTGGTCACATGCACAGCAAGAGGCTGTTGTGGTTCAGAACTTCCCTGGTTTTGCTCAGTTGGAT
TTTGGTTCTGATTATAGGATGCGACGAGCCTTTAGTGAAGGCGACATACAGAAACTAGGGACTGGTCATTTTCAGTCTCCGTTGGA
TATGATTATTGTGAGCTGTACTTCAGAGGATCGACGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCAGGCGAAATTTCGGGC
GTAAAATCAAGTATGCTTGTAGGAAAGCTCTTGCAGATAACCAACCGAGGATCCGAGGAAGGTTTGCGAAAACAGAGGAGCGGAAA
TAGAATGGTTTCAAATGAATGGGGCTGAGTAAAATGAAGAACTTGAAAACATAAGGAGATAAAGCCTATCGCATCAGAAACTAGTT
TTGTTTAATATATGTATAGAATTAAAATGTTATAAGCCTTTAGTTAGTGTTTTCTTGTGTATAAAAATGGTTTATCTGAATAAGCT
TTTTGTTGAAAGAAATGTAGGTACAGAAGTGTTAAGTAATGGAGGTGAAATATGTGAAAATGTATGAATGTATAAAATTCTGAATA
TTTATTATATACATTAGATCATGTGAAATGAAAAATGTGATTGATGTTTCTTTGCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568793 CCT motif family protein [Arabidopsis thaliana]11053e-118
BAA97319 unnamed protein product [Arabidopsis thaliana]10936e-117
XP_002864241 hypothetical protein ARALYDRAFT_495414 [Arabidopsis lyrata subsp. lyrata]10425e-111
AAM61151 unknown [Arabidopsis thaliana]9701e-102
NP_001119425 CCT motif family protein [Arabidopsis thaliana]7844e-081

Swiss-Prot top hits (Blast detail)Scoree value
Q9FHH8 Zinc finger protein CONSTANS-LIKE 51327e-007
Q96502 Zinc finger protein CONSTANS-LIKE 21301e-006
Q940T9 Zinc finger protein CONSTANS-LIKE 41301e-006
O50055 Zinc finger protein CONSTANS-LIKE 11292e-006
Q9FDX8 Zinc finger protein HD11282e-006

TrEMBL top hits (Blast detail)Scoree value
Q8L602 Putative uncharacterized protein At5g5342011052e-118
Q9LV07 Genomic DNA, chromosome 5, P1 clone:MYN810934e-117
Q8LFX9 Putative uncharacterized protein9708e-103
B3H4A5 Uncharacterized protein At5g53420.37843e-081
Q2V2Y9 Putative uncharacterized protein At5g53420.27467e-077

Arabidopsis top hits (Blast detail)Scoree value
AT5G53420.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).11112e-121
AT5G53420.3 unknown protein7894e-084
AT5G53420.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).7823e-083
AT4G27900.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).5735e-059
AT4G27900.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).5735e-059

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  25%
 
92  25%
 
102  25%
 
72  25%

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