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Information for unigene UN17218
| FASTA Sequence |
| Unigene ID: UN17218 | Length: 1051 |
SSR | | GGGGCTAAAGCCCTCCTTCGTCTTCTCCATCTCTCTCCAATGGAGTCACTCCTGCGCGCGTCTTCGTCTCTAGTATCTCTCAGGCC
CAGAATAGACGGCCGAGATTCGTTCATCAACTCTCCCCGCGTGTGCCTCATACCTAGTCTCGCCCCCAGAGGATCAAAGTCTCTTC
CTTTGGTCGTCGCCGCCGCTAAGAAGAAGAAAAGCAAGAAAGACGACAGCCACAGCTTCTCCGCTAGACCTGACGAAGCCACCGGC
CCGTTTCCTGAATCCATTCTTCTCAAAGAGAAGAAGATTGATGAGGAAGGTGATCTTCTTCCTGAGTTCGCTGATGATGAAGAAAA
GGAGCTATACGAGTTTCTTGATCTTCAGCTTCAGAGTGACTTGAATGAAGAAAGGATGAGGCACTATGAAGTGGTTTACTTGATTC
ATGAGAAACATGCAGAGGAGGTTGAAAGCGTCAATGAGAAAGTTCAAGAGTTCTTGAAGGAGAAGAAGGGGAGAGTGTGGAGGTTT
AGTGACTGGGGGATGCGTAGACTGGCGTATAAGATACAGAAGGCAGAGAACGCACACTATATACTGATGAACTTCGAGATGGAAGC
TAAACACTTGAACGAGTTCAAAGGAATGTTGGATGGTGATGAGAGGGTGATTAGGCATCTCGTGATGAAACGTGATGAGGCTATTA
CGGAAGACTGTCCTCCCCCTCCTGAGTTTCACTCTGTTCGTGCAAGTATGGACGGGGATGATGACTTTTATGATGATGATGATGAG
GAATTAGAGGAAGAAGGTGATGATGTAGAGTATGAAGTAGATGATGATGGTAATGTTGTTATGGTGCTGTATGAAGATGATGAAGA
AGAACAAGGACAGGACCAGTCAAATAAAGCCACAAGAGAAAAAAACCGAACAACAGTTAACGTTTGATGAGGTTTAGAGAGCTGTT
TTGTAGAGATCTTCAGGGTTTTGGGACATGGAATTTGTATAAACAATATCACATCATCGAAAGTACTTTTCTTTTTATTTGATTAT
CATATCATATTCATTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566568 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana] | 1213 | 6e-131 |
| AAM62870 unknown [Arabidopsis thaliana] | 1212 | 8e-131 |
| BAA94995 unnamed protein product [Arabidopsis thaliana] | 1209 | 2e-130 |
| XP_002885189 hypothetical protein ARALYDRAFT_318480 [Arabidopsis lyrata subsp. lyrata] | 1150 | 1e-123 |
| XP_002273724 PREDICTED: hypothetical protein [Vitis vinifera] | 812 | 2e-084 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q0VMF9 30S ribosomal protein S6 | 244 | 6e-020 |
| A6VD48 30S ribosomal protein S6 | 241 | 1e-019 |
| B7V1Z8 30S ribosomal protein S6 | 241 | 1e-019 |
| Q02F83 30S ribosomal protein S6 | 241 | 1e-019 |
| Q9HUM9 30S ribosomal protein S6 | 241 | 1e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q948R9 AT3g17170/K14A17_29 | 1213 | 4e-131 |
| Q8LE34 Putative uncharacterized protein | 1212 | 5e-131 |
| Q9LSN0 Genomic DNA, chromosome 3, TAC clone:K14A17 | 1209 | 1e-130 |
| B9HIK6 Predicted protein | 791 | 3e-082 |
| A2Q664 Ribosomal protein S6 | 764 | 5e-079 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G17170.1 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3); structural constituent of ribosome | 1218 | 6e-134 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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