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Information for unigene UN17278

FASTA Sequence
Unigene ID: UN17278Length: 1590 SSR 
ATCCACAATCTCCAAAAACATCCGAGATCTCCCTTCTCCCTTTGTGTGCGCTCCGAGTCAGTTAGACATGGCCACCACCGCATCTC
CAGCTCCGACGAAGAAATCGAGAAACAGCAGAAAGGCGTTGAAGCAGAAGAACGAGATCGTCGCGACGGCGGAGACTCCGTCGTCG
CCTGTCTCCGCCGCCAAGGGGAAGGGGAAGAAGTCGTCGTTCGAGAAAGATCTGTTGGAGATGCAGGCGATGCTGGAGAAGATGAC
GATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGAGGAGATTCTGAGGAAGAAGGAGAAGGAGCTCGTGACGAGAGACG
CTGAGCAGGAGAGGCTCAAGACGGAGCTGAAGAAGCTTCAGAAGACGAAGGAGTTCAAACCTAACATGACGTTTGCTTGTGGACAG
TCTCTCACACAAGGTGAGGAAGAAAAGGTGAACAAGAAGAAGAAGAAGAAGGATTGTCCCGAGAGGAAGCGACCATCGTCGTCATA
CATTCTGTGGTGTAAGGAGCAGAGGGATGAAATCAAGAAGGAGAATCCTGAAGCTGACTTTAAGGAGACTTCGAATATTCTCGGCG
CTAAATGGGAGTCTCTTAGCGCGGAAGAGAAGAAGCCTTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGGTT
GCTAAGGAGAAGCGTGAGAGAGAGGCCATGAAGCTTCTTGATGATGAGCAGAAGCAGAAGACTGCTATGGATTTGCTTGATCAGTA
TCTTCAGTTTGTGCAGGAAGGTGAACAGGATATAAAGAGGAAGAGCAAGAAGCAGAAGGATCCTCGGAAGCCAAAGCATCCCATAT
CTGCCTTCCTGGTTTATTCCAACCAGAGGAGAGCTGAGTTACGTGAAGAGAACAAGAACGTTGTCGAGGTAGCAAAGATGACAGGA
GAAGAGTGGAAGAAGTTGTCAGATAAACAAAAAGCACCCTTCGAAGAGGTGGCAAAGAAGAACAAGGAGACATACCTGGAAGCGAT
GGAGGAGTACAAGAGAACGAAGGAAGAAGAGGCGATGAGCCAGAAGAAAGAAGAAGAGGAGCTCTTGAAACTCCACAAACAGGAAG
CTCTCCAGCTTCTTAAGAAGAAGGAGAAAACAGACAATCTGATCAAGAAGGAAAAAGAGACCAAGAAGAAGAAGAACGAAAACGTA
GACCCAAACAAACCCAAGAAGCCTGCTTCGTCATTCCTTCTCTTCAGCAAAGATGCAAGGAAGACTTTGACAGAAGAACGTCCTGG
GACGAGCAACTCAACAGTTACCGCTCTAATCTCAGTGAAATGGAAGGAATTGGGTGAAGAAGAGAAGCAAAGTTACAACAACAAAG
CAGCAAAGTTGATGGAAGCATACAAGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCTGCGGCTACGACCAGTAGCTAGAAG
AATTATCTATCTCTCTTTGAAATTGAAATAATGTTCAAGTCCTGTTGAACATGTGACTCTTTATGCATTTTGTTAGAATCTGAAAA
CTCAAGTGATTTCTTCTATAAAAAGATTACTAGGTTTTATTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_194111 HMG (high mobility group) box protein [Arabidopsis thaliana]19154e-212
ACC91248 high mobility group HMG1/2 family protein [Arabidopsis halleri]19012e-210
NP_001190816 HMG (high mobility group) box protein [Arabidopsis thaliana]18643e-206
AAS79547 At4g11080 [Arabidopsis thaliana]16824e-185
NP_192846 HMG (high mobility group) box protein [Arabidopsis thaliana]16063e-176

Swiss-Prot top hits (Blast detail)Scoree value
P40618 High mobility group protein B31857e-013
P36194 High mobility group protein B11849e-013
P40673 High mobility group protein B21849e-013
P26583 High mobility group protein B21849e-013
P30681 High mobility group protein B21831e-012

TrEMBL top hits (Blast detail)Scoree value
Q9SUP7 98b like protein19153e-212
B2WS76 High mobility group HMG1/2 family protein19011e-210
Q700E0 At4g1108016823e-185
Q9T012 98b like protein16062e-176
B9RCQ0 Transcription factor, putative14181e-154

Arabidopsis top hits (Blast detail)Scoree value
AT4G23800.1 high mobility group (HMG1/2) family protein19331e-216
AT4G11080.1 high mobility group (HMG1/2) family protein16831e-187
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor1722e-012
AT1G20693.2 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor1722e-012
AT1G20693.3 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor1722e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  33%
 
83  50%
 
61  17%

Unigene MembersMember information