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Information for unigene UN17310

FASTA Sequence
Unigene ID: UN17310Length: 1324  SNP
GATTTGCCTTTGGCTCACATCCTTGAGTTAGCAGCTGAGAGTGTAATGGCTACTATTGGGAGTGCTATTGGATATGGATCTCCCTT
GACGCTCACTGATACTTCGAACAAGATTAAAAAGGTCACAAAGGGAGATGTCACAGCGCTAAAGCCTACTATAATGACAGCTGTTC
CAGCCATTCTTGATCGTGTCAGGGATGGTGTCCGCAAAAAGGTTGATGCAAAGGGAGGAGTGGCAAAGAAACTGTTTGACTTTGCA
TATGCTAGGAGACTATCTGCAATCAATGGAAGCTGGTTTGGAGCCTGGGGACTGGAGAAGCTCCTCTGGGATCTGCTTGTGTTTGG
TAAAATCCGTGCTGTCTTGGGAGGTCAACTCCGTTACTTGCTCTCTGGAGGAGCCCCTCTTTCTGGTGACACTCAGAGATTCATTA
ACATATGCGTTGGGGCTCCAATTGGTCAGGGATATGGACTAACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGATGATACA
TCTGTTGGCCGTGTGGGTGCTCCCCTTCCTTGCTCCTTTGTTAAGCTAATAGACTGGCCGGAAGGCGGGTACTTAATCAGTGATAA
GCCAATGCCCCGTGGTGAAATTGTAATTGGTGGCTCTAATATTACACTTGGGTATTTCAAGAATGAAGAGAAGACTAAAGAAGTTT
ACAAGGTTGATGAAAAGGGGATGAGGTGGTTCTACACAGGAGACATAGGACAGTTTCACCCTGATGGTTGCCTTGAGATTATAGAC
CGTAAGAAGGATATTGTTAAACTTCAGCATGGGGAATATGTCTCCTTGGGCAAAGTGGAAGCTGCTCTAAGTATAAGCCCATACGT
TGAAAACATAATGGTTCATGCTGATCCGTTTTACAGTTACTGTGTGGCTCTTGTGGTTGCTGCGCAACAAACGCTTGAAGGTTGGG
CGTCAAAGCAAGGAATAGAGTTCACCAACTTCGAAGAGCTGTGTGCTAAAGAACAAACCGTGAAAGAAGTGTATGCGTCTCTTGTT
AAGGCGGCTAAACAGTCGCGGTTGGAGAAGTTTGAGATACCAGCAAAGATCAAGTTGTTGGCGGCTCCATGGACGCCAGAGTCAGG
GTTAGTGACAGCAGCACTAAAGCTTAAAAGAGATGTAATTAGGAAGGAGTTCTTTGAAGATCTCACCAAGCTATATGCTTCCTAAA
TCTTTCTTCTTTCGTCTTCTACTATCTTTTTTTTTTGTTTTTTAACTTTCTATAAACACACAACTTGTCTGTCTTGCTCTTTAGTT
GGTTTGCTTGAGAGTAGAAAAAAAGAGTGTTGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAC19877 long chain acyl-CoA synthetase [Brassica napus]20329e-226
NP_177882 long chain acyl-CoA synthetase 9 [Arabidopsis thaliana]19612e-217
AAO22689 putative acyl-CoA synthetase [Arabidopsis thaliana]19612e-217
XP_002889149 long chain acyl-CoA synthetase 9 [Arabidopsis lyrata subsp. lyrata]19583e-217
XP_002302236 predicted protein [Populus trichocarpa]17504e-193

Swiss-Prot top hits (Blast detail)Scoree value
O60488 Long-chain-fatty-acid--CoA ligase 410906e-118
O35547 Long-chain-fatty-acid--CoA ligase 410791e-116
Q9QUJ7 Long-chain-fatty-acid--CoA ligase 410574e-114
O95573 Long-chain-fatty-acid--CoA ligase 310395e-112
Q5R668 Long-chain-fatty-acid--CoA ligase 310306e-111

TrEMBL top hits (Blast detail)Scoree value
Q9FNT6 Long chain acyl-CoA synthetase20326e-226
Q84WQ8 Putative acyl-CoA synthetase (Fragment)19611e-217
Q9CAP8 Long chain acyl-CoA synthetase 919611e-217
B9GU43 Predicted protein17503e-193
B9RJ88 Long-chain-fatty-acid CoA ligase, putative17442e-192

Arabidopsis top hits (Blast detail)Scoree value
AT1G77590.1 LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase19616e-220
AT2G04350.1 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)15995e-178
AT2G04350.2 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)15995e-178
AT5G27600.1 LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); long-chain-fatty-acid-CoA ligase/ protein binding6757e-071
AT3G05970.1 LACS6 (long-chain acyl-CoA synthetase 6); long-chain-fatty-acid-CoA ligase6632e-069

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  7%
 
84  27%
 
117  47%
 
71  7%
 
92  13%

Unigene MembersMember information