RadishBase

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Information for unigene UN17313

FASTA Sequence

Unigene ID: UN17313	Length: 1039	SSR
GGGGAACCCCACTGTCTCCTCCAGCAAATAAAAACCATAAAAAGGCGAGATTTTTCACCCAATCTCCGATCTTTTATTCTTCTTCA TCGCTTTGATCGTCATCACACAGATCCTCCATTCTCCTTCGTTCCTCCTTGGAGGATCAGATCTTGGAAGGTCCTCAGCTCAAGGA GAGGAGAAGAAGAAGAAGAAGAAGGGTGAGGAGAGAGAGACTTTTGAAGGATGTCTTCATTCACAGGAACTCAGCAGAAATGCAAG GCTTGCGAGAAGACGGTTTACCCTGTGGAGCTTCTCTCAGCTGATGGTGTTAGCTATCACAAGTCTTGCTTCAAATGCACTCACTG CAAGTCCAGGCTTCAGCTGAGTAGATATTCATCGATGGAAGGTGTGTTGTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGT CTGGTAGCTTCACCAAGAACTTTCAGTCACCTGTTAAACCGGTTGAGAAATCAAGTCCTGAGCTGACAAGAACCCCTAGCCGAGTT GCTGGTATGTTCTCAGGCACACAAGAGAAATGCGCCACTTGCAGTAAAACTGTCTATCCTATCGAAAAGGTAACAGTGGAGAGCCA GACTTATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGTTGCCCTATCTCACCATCAAACTACGCAGCTCTTGAAGGAATCCTCT ACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAAAAGGGAAGTTACAACCACTTGATCAAATCTGCTTCCATCAAACGCTCTGCG GCAGCCGCAGTCGCTGCTGGTACACCTGCAGCCGCCGCTCCTGAATCTTAAAAAAACTCAAATAATCCTCTCTCCTCTCTAGTCTA AATTGAAAACTCAATGCCAAACTGATTCAGTTTGTTTTCTCTTTTATGCCTTTGTGTATGAGTGTGTAATACTGTAATCTATCCTT TGATGTTCTTTGCTTCCATTAATCACTCTCCTAAAGCTTGTTTGTTGTCGTTATTTGGTATCTCTATAAAAAAACTGAGACTTTCC TTTTTCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002876333 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]	992	2e-105
NP_191136 GATA type zinc finger transcription factor-like protein [Arabidopsis thaliana]	990	4e-105
BAH20111 AT3G55770 [Arabidopsis thaliana]	983	3e-104
ACU23614 unknown [Glycine max]	882	1e-092
XP_002279954 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]	862	3e-090

Swiss-Prot top hits (Blast detail)	Score	e value
P29675 Pollen-specific protein SF3	541	2e-054
Q4U4S6 Xin actin-binding repeat-containing protein 2	240	2e-019
Q4KM31 LIM domain-containing protein 2	222	2e-017
Q9BT23 LIM domain-containing protein 2	221	3e-017
Q1LZA7 LIM domain-containing protein 2	219	5e-017

TrEMBL top hits (Blast detail)	Score	e value
Q9M047 AT3G55770 protein	990	3e-105
B9DH94 AT3G55770 protein	983	2e-104
C6TL24 Putative uncharacterized protein	882	9e-093
A5BSA7 Putative uncharacterized protein	862	2e-090
B9SWP2 Pollen-specific protein SF3, putative	862	2e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT3G55770.1 LIM domain-containing protein	991	1e-107
AT3G55770.2 LIM domain-containing protein	991	1e-107
AT3G55770.3 LIM domain-containing protein	991	1e-107
AT3G55770.4 LIM domain-containing protein	991	1e-107
AT3G55770.5 LIM domain-containing protein	991	1e-107

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	7			58%


11	5			42%

Unigene Members	Member information