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Information for unigene UN17341
| FASTA Sequence |
| Unigene ID: UN17341 | Length: 1045 |
SSR | | CGCTAAGTTGAGGAGAATAGTATGAAGAAAAAGAAAAATTGTCTAGATGGTACAATGCATGAACAAAAAACAAAGAGTAACGTAAC
CCCTAAACTTCCTCGAGCTGAACTTAAAACTCTTTCAAAAGCAAAAAGCTGAAGTCTATCAAAACAGAAAAGGAGCCAAAAAGGCT
CTTTTTAGTTCTTCTTGCTCTTTGATTTCCCAGACAATGTCTTGGCCAAATGAGTTCCCTCGAGCCACTCGTCCAGTGATGCGTCG
ACAGACCTTGTTCCTACTTCCACCTTTGACACCTTTTTGGTTTTCTTAGTGAGACGCTGAACTTGGCTGTATGCCCATAGACCGAG
GAGGAGGAGGAGAGCAATCCCAAGTGTGATAAGGAAGACAGACTCACCGCTGAGAAGACCTCCAGATTCAACCACCTCAATGGTTC
CATTGTAGAAGACATTCTGGTATGCCTTGCCTTCCACGTCGTAGATGACATAACCCACCAGATCAAATGCTCCAGGCTGCAGGTAC
TGGCTGACAGCAAAGACGTAGGAGAATGTTGCTTGAACAGAAAATGGGATGGAGGCATTGTTGATTCTCAGCACGGTAAGATTCTG
AACCAACATCTTATGATCATAAGGAAGATGGACGCTGGCCCTAATTCCCATCACACCAACTCTAGATTTCCCATCATTTCTGAGAG
CAACAACGAGCTCAGTATCTTCTCCAGCTATAACCAATCTGCCACTGTTTTGGGGGAAAACAGAGACAGTCTCAACTCCTGGAGCT
GAGGTCAAGTTGAGATCCAAGTCCTGGTCATCTTCCTCAGCACCAGAATCACTGTGTTCTCCAACAACATCGTCAACAATGCTGGA
ATGATCATCGTCCACTTGACATCTAGCAACTTGGAGCAGAGGAGATGCAAGGAGAAGGAGAGCCAGAAACAAAACCCTAACATTCA
TCTTCATCTTCGTCTTCTTCGCCTCTCTTTTTTTTTTCTTGTTTCCCTGAGGTCAACGGAGATTTTTTTCACAAAGGAGAACAAAC
ACTCGCTTCCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878536 hypothetical protein ARALYDRAFT_480966 [Arabidopsis lyrata subsp. lyrata] | 1100 | 7e-118 |
| AAM63845 putative signal sequence receptor, alpha subunit (SSR-alpha) [Arabidopsis thaliana] | 1094 | 4e-117 |
| NP_565498 translocon-associated protein subunit alpha [Arabidopsis thaliana] | 1090 | 1e-116 |
| AAA21820 alpha-subunit; putative [Arabidopsis thaliana] | 1073 | 1e-114 |
| XP_002305486 predicted protein [Populus trichocarpa] | 768 | 2e-079 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P45434 Translocon-associated protein subunit alpha | 1090 | 5e-118 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LC49 Putative signal sequence receptor, alpha subunit (SSR-alpha) | 1094 | 2e-117 |
| Q5M727 At2g21160 | 1090 | 7e-117 |
| A9PFV9 Predicted protein | 768 | 2e-079 |
| B9STC6 Translocon-associated protein, alpha subunit, putative | 764 | 5e-079 |
| B9HRA7 Predicted protein | 762 | 8e-079 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G21160.1 translocon-associated protein alpha (TRAP alpha) family protein | 1091 | 3e-119 |
| AT2G21160.2 translocon-associated protein alpha (TRAP alpha) family protein | 766 | 2e-081 |
| AT2G16595.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: translocon-associated protein alpha (TRAP alpha) family protein (TAIR:AT2G21160.1); Has 191 Blast hits to 191 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | 636 | 2e-066 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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