 |
Information for unigene UN17346
| FASTA Sequence |
| Unigene ID: UN17346 | Length: 1243 |
| SNP | GAGAAAGAAAACACTAATGTGATTTATAATAAGAGTTCTGCAAATTTCTCAAGGAATGGACCAAGAGTTGCAATCATCACATCTTC
CATTAGTAGATCACTTGAATCCACATGGTTCGTTTAATATTCCCAAATTACAATTTCCTCGTTGATCATGCATTCAAATGAACTTC
TAAAACCGTCTAAGTAAAACCAACCAATGAACAACGCAAAGAACTGCCATTGCCTTTATTTGGTTAGGAGAATTCGATTGATGACA
TCAACAGGCAAAGCGTAGGCTGGATCAATTGGTTTGACTCCAGGATACTCGAGGAGGGAAAGCCCTGCAACTCCAAAGTAGGTGTG
GAAAATATCAACAGCATCGTCAGGTCTGTCTGAAATACCTCCGTTCTCCAAATCCTGACAATCCAAGATGAACTTGACAAGCTTTG
CTTTGTTGATCCAGTGAACTCTATCTATCATGATTAGGCTAGATAGGACCCACCAAGAATAGCAAACATCAGGAAGTTTCTCGGGT
CGTCCATTTAAACCCCCTGACTTGACTTGTCTTTCACATAACCACCACCCGAGTAAGTCCTTATCGACATGATGGAGACTCCCGGT
GATAGCAAGAGCACCCACGCAACAGAAAATCTGTCCTGCATGTGATTCTGCTCCGGGTGTGCACCCAAAACCACCATCAAGGTTTT
TGCAGCTAACAATGTAATCAACGGCCTTCTCTACATTGATTTTGTCAAGACATTTCAAAATTGAGAGACAGCATATGGCAATGTAG
GAAAACCTCGTGTCTACTTCGCCCCACATATCTCCAGAGAAGGATCCATCTTCGTTCTGCAAACCAGCAATATAGCTTGATACTTT
TGCAACGTCAAGAATGTCTAGTTTGTCAAAGAGGGCCAAGATTTGTACAGCACTCAGTGTATATAAAACATGGGGGTCATGTCCAG
TATTTCCGGCAAAGCCACCAGATTCGTGCTGGCAGGTCATGAGCCATGAAACGACTTCATCAACGGAAACAGAGGGAAGCTTGTCG
AGTAAGTCTAGAGTGGTGAGTCCCCAGTAGGCACCATTCATTCTTAGATGATCCATCACCACCGACTCAAAACTCTCTTTCTTCTT
TTCTGCCATAAGAATGTAACGTACATGCTTGTCAGCTACAAGCTCACCCATCTGGGAGGACGAGGAAGACGAAGAGCTCATCAGCT
TGATTGGAGACGGAAGACAAGTCGCGCGATTGGAGGCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871518 beta subunit of rab geranylgeranyltransferase [Arabidopsis lyrata subsp. lyrata] | 1587 | 3e-174 |
| NP_568259 RAB geranylgeranyl transferase beta subunit 1 [Arabidopsis thaliana] | 1584 | 7e-174 |
| NP_974770 RAB geranylgeranyl transferase beta subunit 1 [Arabidopsis thaliana] | 1567 | 7e-172 |
| BAB10039 Rab geranylgeranyltransferase, beta subunit [Arabidopsis thaliana] | 1558 | 7e-171 |
| ACU18147 unknown [Glycine max] | 1498 | 7e-164 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P53611 Geranylgeranyl transferase type-2 subunit beta | 1047 | 6e-113 |
| Q5E9B3 Geranylgeranyl transferase type-2 subunit beta | 1039 | 5e-112 |
| Q08603 Geranylgeranyl transferase type-2 subunit beta | 1032 | 3e-111 |
| B0G172 Probable geranylgeranyl transferase type-2 subunit beta | 1015 | 3e-109 |
| P53612 Geranylgeranyl transferase type-2 subunit beta | 1004 | 6e-108 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84J75 At4g26580 | 1584 | 5e-174 |
| Q3E7I9 Putative uncharacterized protein At5g12210.2 | 1567 | 5e-172 |
| Q9FMP2 Rab geranylgeranyltransferase, beta subunit | 1558 | 5e-171 |
| C6T8J5 Putative uncharacterized protein | 1498 | 5e-164 |
| Q6X0N9 Putative Rab geranylgeranyl transferase type II beta subunit | 1486 | 1e-162 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G12210.1 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 1585 | 2e-176 |
| AT5G12210.2 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 1568 | 2e-174 |
| AT3G12070.1 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 1494 | 7e-166 |
| AT3G12070.2 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 1494 | 7e-166 |
| AT2G39550.1 PGGT-I; CAAX-protein geranylgeranyltransferase/ protein heterodimerization | 202 | 5e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
