RadishBase

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Information for unigene UN17368

FASTA Sequence

Unigene ID: UN17368	Length: 748		SNP
TTTTGGAACACATCATTAGATATGTGTATACTATATGGGAAATTTAAAATTAACTGAAGGATCATTACAGAATTCGATACTTAGAC CATCTTACAAGAACCAAACGATTTCATAGAAATGGAACTCCACGTACAAGACCACACTTATTCATTAATAATTATATTGAAAACAC CTTAATAAGTAAATTGAGAAAGTGATGACTTGATGGTGATGGGGATTGTGATGGTGATTGTGATGGTGATTAAGCTTTGTGGACGT GCTCCTCCATGTCAGCAACCATGCTCTTGACGAGTTTCATGTAGCTGCTTGGTTCGGGGACTTCATCGTTGCGCTTCTCCCAGATC ATAGTGATTTTGCCGACGCAACTGTCTTCAGTCCTGGGAATAAATTGGACGACGATGTCACAAACCTTGAAATGCTCCATCACGTG ACCTTCAATTCCTCTAGCCGTCATTGTTTTATTCTCATCGTCTATCTCTCTTTTCTCCTTGTATACCTCCTGCTTTCCATCCAATG TGTAGTTCCAAATCTTGATACCCCCGTGAGAGTCCCATTCGCCTTCGTGAACGGTGACATTCTGAATGTGGTGGCCGATGGTATCA GGGAAGAGATGGTTCTCACTCTTCCACCGCTTGTAGTGTTTCTCCGCCGTCCCTTTTAAAGGAACCTCCGTCACGTATGTTCCCGA CGTTGCCATTTCTTTCTTGTTTTAAAGCTTTGGCTCTCTTTTTTTTGTTTGGTTTATGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACC91258 major latex-related protein [Capsella rubella]	661	3e-067
XP_002867694 hypothetical protein ARALYDRAFT_492500 [Arabidopsis lyrata subsp. lyrata]	661	3e-067
NP_194099 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]	653	3e-066
NP_194098 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]	647	1e-065
XP_002875076 hypothetical protein ARALYDRAFT_904347 [Arabidopsis lyrata subsp. lyrata]	640	9e-065

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZVF3 MLP-like protein 328	637	9e-066
Q9ZVF2 MLP-like protein 329	612	7e-063
P19825 Major latex protein 15	179	1e-012
Q9C7I7 MLP-like protein 165	123	4e-006
Q9C7I3 MLP-like protein 168	121	6e-006

TrEMBL top hits (Blast detail)	Score	e value
B2WS86 Major latex-related protein	661	2e-067
Q9SUQ9 AT4g23680/F9D16_150	653	2e-066
Q9SUR0 AT4G23670 protein	647	1e-065
Q8LDJ8 Major latex protein, putative	629	1e-063
Q9LIM9 Major latex protein-like	629	1e-063

Arabidopsis top hits (Blast detail)	Score	e value
AT4G23680.1 major latex protein-related / MLP-related	654	9e-069
AT4G23670.1 major latex protein-related / MLP-related	648	5e-068
AT2G01520.1 MLP328 (MLP-LIKE PROTEIN 328); copper ion binding	638	7e-067
AT3G26460.1 major latex protein-related / MLP-related	630	6e-066
AT3G26450.1 major latex protein-related / MLP-related	624	3e-065

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	14			41%


9	7			21%


7	4			12%


11	6			18%


12	3			9%

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