 |
Information for unigene UN17401
| FASTA Sequence |
| Unigene ID: UN17401 | Length: 1768 |
| SNP | GAGATTTGATCTCAATTATTGATTTCTCAGAGAACTCATAGCCAAACAGAGACAGAGAGAGACTACAATGGCGACTATAGCTGCTG
CAACCGGAGTTCTAAAGGTACCCGAGGCGGTTCCCACGAGGAGGACTCTTTCTTTCTCCTCCTCTGTATCTTTATCCGACGAGAAG
GCTTCTCTCCGCCGAGGATCCGTCTTTTCTCGTGGTGGCCGAGTGAGGAATAATCCGATGATCGTGTCTCCCAAGGCCGTCTCCGA
TCCTCAGAATTCACAGACCTGTCTCGATCCTGACGCGAGCAGGAGTGTGTTGGGGATCATCTTAGGAGGTGGGGCCGGAACTCGTC
TCTATCCTCTCACCAAGAAGAGAGCCAAACCCGCCGTCCCTCTCGGCGCCAACTACAGGCTCATCGACATCCCCGTCAGCAACTGT
CTCAACAGCAACATCAACAAGATCTACGTCCTCACGCAGTTCAACTCCGCCTCTCTAAACCGCCATCTCTCGCGAGCCTACGCCAC
TAACATGGGAGGTTACAAGAACGAAGGCTTCGTTGAAGTCTTCGCCGCTCAACAGAGTCCTGAAAACCCCAACTGGTTTCAGGGGA
CGGCTGATGCGGTGAGGCAATACTTGTGGTTGTTTGAGGAGCATAATGTTCTTGAGTATTTGATTCTTGCTGGGGATCATTTGTAT
CGAATGGACTATGAGAAGTTCATTCAAGCGCATAGGGAGACTGATGCTGATATCACCGTGGCTGCGTTACCGATGGACGAGGAACG
AGCCACTGCTTTTGGGTTGATGAAGATTGATGAGGAAGGACGTATTGTTGAATTTGCCGAAAAACCAAAGGGGGGGCAGTTAAAGG
CCATGAAGGTTGATACAACGATTCTAGGTCTTGATGATAAGAGAGCCAAGGAGATGCCTTATATTGCGAGTATGGGTATTTATGTT
GTTAGCAAAGATGTAATGCTGGAGCTACTACGGAACAAGTTTCCTGGAGCTAATGACTTTGGAAGCGAAGTCATCCCTGGTGCCAC
TTCCCTTGGACTCAGGGTGCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGGCATTCTATAACGCAAATC
TCGGAATCACCAAAAAACCGGTTCCTGATTTTAGTTTCTATGACCGTTCTGCTCCAATCTACACACAGCCACGTTACCTACCACCG
TCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGGGCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGT
CGGACTCCGTTCCTGCATATCAGAAGGTGCTATAATTGAAGATTCGTTACTAATGGGAGCTGACTACTACGAGACTGCTTCGGAAA
AGAGCCTCCTAACGGCGAAAGGGAGTGTACCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATTGACAAAAACGCA
CGTATCGGTGATAATGTCAAGATCATAAACAGCGACAATGTGCAAGAGGCAGCGAGAGAGACTGAAGGATATTTCATAAAGAGTGG
AATTGTTACCGTTATCAAGGACGCCTTAATCCCAACGGGCACTCTTATCTAAACACATACACATGCTCCCTTTTTTTCATATCTCT
ATAAACAGGGAAAGACAAGACTTTGAGGATGTAAACGCCTGTGAAATTACTTAATCTAAATAAGTTCTCTAAGTCTACTTTATTCA
ACATCTGGTATACAAGCTATTTATATAAGTAAAGTTCAATCTTCGTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33704 unnamed protein product [Thellungiella halophila] | 2405 | 7e-269 |
| NP_199641 glucose-1-phosphate adenylyltransferase small subunit [Arabidopsis thaliana] | 2358 | 2e-263 |
| XP_002863884 hypothetical protein ARALYDRAFT_494882 [Arabidopsis lyrata subsp. lyrata] | 2356 | 4e-263 |
| AAB09585 ADP glucose pyrophosphorylase small subunit [Arabidopsis thaliana] | 2340 | 3e-261 |
| XP_002321214 predicted protein [Populus trichocarpa] | 2280 | 2e-254 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P55228 Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic | 2358 | 9e-265 |
| Q9M462 Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic | 2269 | 2e-254 |
| P23509 Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic | 2267 | 3e-254 |
| P52416 Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic | 2263 | 9e-254 |
| P52417 Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic | 2260 | 2e-253 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PF44 Glucose-1-phosphate adenylyltransferase | 2280 | 2e-254 |
| A7XAQ5 Glucose-1-phosphate adenylyltransferase | 2279 | 2e-254 |
| B9SF14 Glucose-1-phosphate adenylyltransferase | 2277 | 3e-254 |
| Q38M81 Glucose-1-phosphate adenylyltransferase | 2267 | 5e-253 |
| D5L5Q9 Glucose-1-phosphate adenylyltransferase | 2265 | 8e-253 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G48300.1 ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase | 2359 | 6e-266 |
| AT5G19220.1 APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1); glucose-1-phosphate adenylyltransferase | 1318 | 3e-145 |
| AT1G27680.1 APL2 (ADPGLC-PPASE LARGE SUBUNIT); glucose-1-phosphate adenylyltransferase | 1313 | 1e-144 |
| AT2G21590.1 APL4; glucose-1-phosphate adenylyltransferase | 1207 | 2e-132 |
| AT2G21590.2 APL4; glucose-1-phosphate adenylyltransferase | 1207 | 2e-132 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
