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Information for unigene UN17409
| FASTA Sequence |
| Unigene ID: UN17409 | Length: 1069 |
SSR | | GGCATCGAGGAGAACAGAAGTTACAGAACACACTATTTCTCTTGTGCATTTTCTTGTTCGTTGACCTGATAACAAAAAGGCATCGA
AGATGAATGTTAGGGTTTTGTTTCTGGCTCTCCTTCTCCTTGCATCTCCGCTGCTTCAAGTTGCTAGATGTCAAGTAGATGCCGAG
GATCATTCAAGTATTGTTGACGATGTTGTGGGAGAACACAGCGATGATGGTGCTGAGGAAGATGATCAGGATTTGGATATCAACTT
GACCTCTGCTCCTGGAGTTGAGACTGTCTCTGTTTTTCCCCAAAAACAGTGCCAAATTGGTGCCAGCTGGAGAAGAGACCGAGCTC
CTTGTTGCTCTCAAAAACGATGGCAAATCTAACGTAGGTGTGATGGGGATTAGGGCCAGCGTCCATCTTCCTTATGATCATAAGCT
CTTGGTTCAGAATCTTACCATGATGAGATTCAACAATGCGTCCATCCCAACTTCTGTTCAAGCAACATTCTCTTACATCTTTGCAG
TCAGCCAGTACCTGCAGCCTGGAGCATTTGATCTGGTGGGTTATATCATCTACCACGTGGAGGGAAAGACACACCAGAGTGTCTTC
TACAATGGGACCATTGAGGTTGTTGAATCTGGTGGTCTTCTCAGCGGTGAGTCTGTCTTCCTCATTACACTTGGGATTGCTCTCCT
CCTCCTCCTCGGTCTATGGGCATACAGCCAAGTGCAGCGTCTCACTAAGAAACCAAAAAGTGTCCAAGTGGAAGTAGGATCAGTCT
ACCGACGCATCAATGGACGAGTGGCTCGAGGGACTCATTTGGCCAGACATTGTCTGGGAAATCGAAGAGCAAGAAGAACTAAGAAG
AAAACTTATTTGCTCCTTGCAGTTTTTAGAGACTCGGCTTTTAGCGTTTTGAAAGAGTTTTACAAGTTTTAAAGTTGAGTCTTGAG
GAACTTTAGGGTTTATAAACGTTACTTTCCTCTTTTTTTTTTGTTCATGCATTTGTGTACTTTTTAGACAATCTTATTACCTTCCT
CATCAAACAACTTTTAACTTAATAATGGTTTAGATCT
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002878536 hypothetical protein ARALYDRAFT_480966 [Arabidopsis lyrata subsp. lyrata] | 716 | 3e-073 |
| NP_565498 translocon-associated protein subunit alpha [Arabidopsis thaliana] | 707 | 3e-072 |
| AAA21820 alpha-subunit; putative [Arabidopsis thaliana] | 707 | 3e-072 |
| AAM63845 putative signal sequence receptor, alpha subunit (SSR-alpha) [Arabidopsis thaliana] | 707 | 3e-072 |
| XP_002529245 translocon-associated protein, alpha subunit, putative [Ricinus communis] | 575 | 6e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P45434 Translocon-associated protein subunit alpha | 707 | 1e-073 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q5M727 At2g21160 | 707 | 2e-072 |
| Q8LC49 Putative signal sequence receptor, alpha subunit (SSR-alpha) | 707 | 2e-072 |
| B9STC6 Translocon-associated protein, alpha subunit, putative | 575 | 4e-057 |
| B9HRA7 Predicted protein | 566 | 4e-056 |
| A9P9I6 Putative uncharacterized protein | 554 | 1e-054 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G21160.1 translocon-associated protein alpha (TRAP alpha) family protein | 707 | 1e-074 |
| AT2G21160.2 translocon-associated protein alpha (TRAP alpha) family protein | 535 | 1e-054 |
| AT2G16595.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: translocon-associated protein alpha (TRAP alpha) family protein (TAIR:AT2G21160.1); Has 191 Blast hits to 191 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | 446 | 2e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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