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Information for unigene UN17418
| FASTA Sequence |
| Unigene ID: UN17418 | Length: 1077 |
SSR | | AGAATAAAGAAGCACTCGAGTAATGCCAAAAGAAACTTTATTGCCTAAAACCCAGTAAAGGTAAAACACTTCATCAAATCCTCCCT
CCCTCACATTCAAGATTCAAGGTTCAAAAATCAACAACAACAACAACAATGCAGCAAACTTAGAGCTTGAGGAAAACAAACTCCTC
GACCGCTGGGATCTCTCCAATCTTCTTAAGCGTCTCCTTGCTTGGCTGATCATCTACACCAATCGCCATGATCGCTTGCTTCCTCG
GCGCAATCCTCCCAACGCTCATGAAGTTAACATTCACATTAGACTCTCCAAGAATGCTCCCCACCGTTCCAATCATACCCGGCTGA
TCAACCTGCCTGCACAGTATGATACTACCTTCAAGAGTCACATCCACCTCAAAAGATCCAACCTTCGTCAGATGCGGGATCCCGTC
TTTCACCCTTCCTTCCACTTTCACCTCTCCTGATTCAGACAAGGAACTAGCGAACTTGGACTCCACGTTTCCCAGCTGAACTGTTA
TGGTCTCCAACGGGTTCTCTGGCGACCCGTCCAAGAGCACACGCTCCTCCGAGAGTCTGAGACCTCTCTGCTTGGCTGTGAAGTCA
GCGTTGACCAAGTTGACGTATACGTCGGAGATCGGCTCGATGATTCCCTTGGTGATCATGGCTCGGAGCAGTCTCGTGTCGAGATC
ATCAGTGGCTCTTGCTGAGGTGTATGAAACTTTCACGTTCTTCACGCCGCTTCCTCCAGCCACTAGCTGCACCGCTAGTCTCCCTA
GCTTCTCGGCTAGTATCACGTATGGTTTCAGCTCAGTCAGAACCTCAGCAGAAACCATAGGAGCATTGACAGCAGTAGCAGCAAGC
TCTCCATTCAAAGCACCAACAACAGCTTCAGCAATCTCAATAGCAACTCCTTCCTGAGCCTCCATTGTGCTGGCTCCGAGATGAGG
GATAGGGTCTTGAGGGGGTTGGTGGCGGCGACGGAGATCGTGGAGGATGCGGCGGCGGCTGACATTGTTAACCGCTTTGGGGAGTG
ATGCGTAGAGAGAGAGAGCAGTTTGTGAGAGATCTGAAGGGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867129 hypothetical protein ARALYDRAFT_491252 [Arabidopsis lyrata subsp. lyrata] | 1265 | 6e-137 |
| NP_195146 D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] | 1262 | 1e-136 |
| AAM60833 Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] | 1258 | 4e-136 |
| XP_002883891 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1232 | 4e-133 |
| BAD94241 Phosphoglycerate dehydrogenase - like protein [Arabidopsis thaliana] | 1224 | 3e-132 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O04130 D-3-phosphoglycerate dehydrogenase, chloroplastic | 1000 | 1e-107 |
| Q58424 D-3-phosphoglycerate dehydrogenase | 219 | 5e-017 |
| O27051 D-3-phosphoglycerate dehydrogenase | 198 | 1e-014 |
| P73821 D-3-phosphoglycerate dehydrogenase | 193 | 5e-014 |
| O29445 D-3-phosphoglycerate dehydrogenase | 189 | 1e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O49485 Phosphoglycerate dehydrogenase-like protein | 1262 | 9e-137 |
| Q8LGJ6 Phosphoglycerate dehydrogenase-like protein | 1258 | 3e-136 |
| Q56WY7 Phosphoglycerate dehydrogenase-like protein | 1224 | 2e-132 |
| D2D316 Phosphoglycerate dehydrogenase | 1180 | 3e-127 |
| B9RYA3 D-3-phosphoglycerate dehydrogenase, putative | 1162 | 3e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT4G34200.1 EDA9 (embryo sac development arrest 9); ATP binding | 1263 | 4e-139 |
| AT3G19480.1 D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative | 1092 | 3e-119 |
| AT1G17745.1 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase | 1001 | 9e-109 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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