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Information for unigene UN17427

FASTA Sequence
Unigene ID: UN17427Length: 1342 SSR 
AAAGGGTCTCTCAACCCATGCAAACGATCATATTTTGTAACTAAACAGAGTTGTATCGAGGAGAAATGGTCTTACATTATGACAAT
AACCATTTGACTAATAAAGATACGAACCCAAAGAAAAGGAAGTGAATAACGTCTACCAAAACATGTATCAGGGTTCCATCTAAACT
GAAAGATTGCAAAAGCCGTTGGCAAATTTTAACTTAAAAGGAAGAAAAAAAACAATCATAGCGCAAAAAGCCATCCATCCAGATAC
TTGAGGTGGTGCTGCCTGTTAGATGGGACTGACATAGTTAGCAAACCTACCTTCATAAGAGGTGAGATCGGAAGGGAGCTTGGAAA
CGAGGCAAGCTGCAGCAACGACGCTGTGAAATGGCTGATGCGTGCTTAGTTCTCGCCGTAGCATAAACCTGGGAGCGGAAGAAGAT
TCAATTCGAGTCTGGCGAAGAGGGGACGATGAGGAATTGGGGTTTGGGGAGGAGATTCTAGGTCTAGGTGGTGAGATCAAGCTTCT
TCTGGTAGCGGATCTTAAGATGGAGGTTGACCTAGAAGCGATGCTCCTTGCACTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGCAAAACCTACGATCTTCTTCGTCAAGATTCGAGTATGAAAGGAGGTAAATCAAAGACTGAAACCAGGAGCTCCAAGCT
CTCTGTGGCCAAGAAGCCAGCTAAAGCAGCAGGTCGTAGCAAAGCGGCGGCTAAGGACCCTAACAAACCAAAGAGGCCTGCTAGTG
CCTTCTTCGTTTTCATGGAGGACTTCCGTCAGACTTACAAGAAGGATCACCCCAACAACAAATCTGTTGCTGCTGTTGGTAAAGCT
GGTGGAGAAAAGTGGAAATCCTTGTCTGACTCTGAGAAGGCTCCCTTTGTAGCTAAGGCTGATAAGCGCAAGGTTGAGTATGAGAA
GACCATGAAAGCCTACAACAAGAAGCTGGAGGAAGGCCCAAAGGAGGACGAGGAGGAATCTGACAAGTCCGTGTGAGGTGAATGAT
GAGGATGATGCCGATGATGGTAGTGATGAGGAGGAAGACGATGACTAAAGAAGTTGAAGCTGGTAGCATAATAGGGGCGCTACAAA
GATCTCTGGGATGTTTTTTTCTTTTTTATTTACTGATGTTTCAAGTTAGTAAGCTTGCCACTATCTCTCACTGATTCTGATTCTAC
GTGTAATGGAAAAAGTGTGTAGACTGTTTGAATGAGAGATTTGCAGCTCTATGTAACAATTTAGCTTTTCGTTCTAAAATATGTTA
TCATCCCTTTCTTCACTATCTCAAAGTTGCATGTTTTCACATGGCACGATGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33706 unnamed protein product [Thellungiella halophila]5703e-056
AAF80615 F2D10.18 [Arabidopsis thaliana]5613e-055
NP_564123 high mobility group B2 protein [Arabidopsis thaliana]5515e-054
NP_001031074 high mobility group B2 protein [Arabidopsis thaliana]5515e-054
NP_001077569 high mobility group B2 protein [Arabidopsis thaliana]5515e-054

Swiss-Prot top hits (Blast detail)Scoree value
P26585 HMG1/2-like protein4275e-041
P40619 HMG1/2-like protein4015e-038
P40620 HMG1/2-like protein3981e-037
P27347 DNA-binding protein MNB1B3495e-032
P40621 HMG1/2-like protein3253e-029

TrEMBL top hits (Blast detail)Scoree value
Q9LM85 F2D10.185612e-055
A8MQZ3 Uncharacterized protein At1g20693.35513e-054
O49596 HMG protein5513e-054
Q2V4M2 Putative uncharacterized protein At1g20693.25513e-054
A8MQS4 Uncharacterized protein At1g20696.35192e-050

Arabidopsis top hits (Blast detail)Scoree value
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5512e-056
AT1G20693.2 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5512e-056
AT1G20693.3 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5512e-056
AT1G20696.1 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5351e-054
AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5351e-054

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  60%
 
122  40%

Unigene MembersMember information