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Information for unigene UN17439
| FASTA Sequence |
| Unigene ID: UN17439 | Length: 604 |
| SNP | GGCCGACAGCCGTGAGAAACCATGTGGTCGGCGACGCTCGCTTTCCCTTCCTTTGTGGCTTCATCAACTTCTCTATCAAGCTACGC
AAAACCTAGACTTCCTAAGATTCAAGCTTCGCTGTCTAATTACCCTCTCGCCAGCAAAATCATGGTCAGAAACTTACCGTTTTCTA
CAAGTGAAGACTTTCTGCAAAAGGAGTTTTCAGCTTTCGGCGAGATAGCTGAAGTTAAGCTTGTCAAAGATGAGTCAATGAAGAGA
TCAAAAGGTTATGCCTTCATTCAATACATGTCTCAGGACGATGCTTTTCTAGCCATTGAGACCATGGACCGTCGGATGTACAATGG
GAGGATGATTTATATAGACATTGCGAAACCAGGGAAGCGTGATTTCCAACAGCAGCCGAGGACTTCTGGTCCCCCTGAGAAGCTCC
AGGTGCCAGAAGAACCGGCCAGTAACGAGGTTGCTGATTGCTGGTATTAAACATTTAGTACCAAGTTAACGAAACTGTGTCTGTAT
TTGCGTAGAAACATTAAGAGACAATGATCAAATATAAACAAAATGTTGTTTTTACTACTGATAAACAATCACTGACACGGTTCCAT
TT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAM63455 unknown [Arabidopsis thaliana] | 668 | 3e-068 |
| NP_567594 RNA recognition motif-containing protein [Arabidopsis thaliana] | 665 | 7e-068 |
| XP_002869951 hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp. lyrata] | 660 | 3e-067 |
| CAA16611 putative protein [Arabidopsis thaliana] | 488 | 2e-047 |
| XP_002303346 predicted protein [Populus trichocarpa] | 391 | 4e-036 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54PB2 Multiple RNA-binding domain-containing protein 1 | 171 | 7e-012 |
| Q4WJT7 Multiple RNA-binding domain-containing protein 1 | 164 | 4e-011 |
| Q5BGA9 Multiple RNA-binding domain-containing protein 1 | 163 | 6e-011 |
| Q8R3C6 Probable RNA-binding protein 19 | 147 | 4e-009 |
| Q9Y4C8 Probable RNA-binding protein 19 | 146 | 5e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LCR0 Putative uncharacterized protein | 668 | 2e-068 |
| Q67XI5 At4g20030 | 665 | 5e-068 |
| O49430 Putative uncharacterized protein AT4g20030 | 488 | 2e-047 |
| B9GY20 Predicted protein | 391 | 3e-036 |
| B9T5A2 RNA binding protein, putative | 351 | 1e-031 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G20030.1 RNA recognition motif (RRM)-containing protein | 666 | 3e-070 |
| AT3G20930.1 RNA recognition motif (RRM)-containing protein | 182 | 4e-014 |
| AT4G19610.1 RNA binding / nucleic acid binding / nucleotide binding | 177 | 1e-013 |
| AT5G06210.1 RNA-binding protein, putative | 153 | 8e-011 |
| AT2G37510.1 RNA-binding protein, putative | 148 | 3e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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