RadishBase

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Information for unigene UN17445

FASTA Sequence

Unigene ID: UN17445	Length: 863		SNP
GGATGAGAGAACAATTACTTGCATTTGAATTTCACGATTCATATAGGAATGATCCTTGAGTTATATTACACAACGCAAGCAAGCCG TAAAAAGGAGATACATAGATATTGGCTTCGAAGTGTGATAAGCCCTTTCAGGAAGAAGAGCAACAAGGCTTCTTAGTGTTTGATTC AGAAGAGGCAGCAGCGACATCGATTGTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATATCGATTTCTTGC TGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGGCCTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGAC AAGCCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAGATGCTTCAGGTCCGTCTTGTTTCCGATCAACAT GATGACGATGTTGGAATCCGCATGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCGAACGTTGTTGGTTTCGTGACGTCGT AGACCAAGAGAGCACCGAGCGCACCTCTGTAGTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATATCTGC GCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAATTCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTC GCGAGTGAATCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCACTTTAAACAAGTAGTCGTACTCTTCTT CCGGTCTTCTCGCCATTGTTAAAACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTGGGATTTTCAAAACTGAGT GCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001147252 ras-related protein Rab11C [Zea mays]	1042	3e-111
NP_172434 Ras-related protein RABA2a [Arabidopsis thaliana]	1030	7e-110
XP_002892514 hypothetical protein ARALYDRAFT_888208 [Arabidopsis lyrata subsp. lyrata]	1020	1e-108
XP_002526431 protein with unknown function [Ricinus communis]	949	2e-100
XP_002264444 PREDICTED: hypothetical protein [Vitis vinifera]	941	1e-099

Swiss-Prot top hits (Blast detail)	Score	e value
O04486 Ras-related protein RABA2a	1030	3e-111
Q40193 Ras-related protein Rab11C	831	4e-088
Q39434 Ras-related protein Rab2BV	827	1e-087
Q96283 Ras-related protein RABA2c	825	2e-087
Q40523 Ras-related protein Rab11A	806	3e-085

TrEMBL top hits (Blast detail)	Score	e value
B6SNF6 Ras-related protein Rab11C	1042	2e-111
B9SKB2 Putative uncharacterized protein	949	1e-100
B9N741 Predicted protein	936	4e-099
A9PCE2 Predicted protein	930	2e-098
C6TJF9 Putative uncharacterized protein	930	2e-098

Arabidopsis top hits (Blast detail)	Score	e value
AT1G09630.1 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding	1034	1e-112
AT3G46830.1 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding	825	2e-088
AT1G07410.1 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding	820	6e-088
AT5G59150.1 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding	815	2e-087
AT5G60860.1 AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding	759	8e-081

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	5			31%


10	3			19%


6	4			25%


8	3			19%


18	1			6%

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