RadishBase

| | | |

Information for unigene UN17458

FASTA Sequence

Unigene ID: UN17458	Length: 854		SNP
GGATACCCCTCACATTCAGGTCGTTTCTAGGATTACGATAATTCATTGTTGGAGGATCAATCAAATCATCAGCTTCGGGAGATCTC TTCTGGGAATCGAGGATCTGTTGAGTTATCTGTGGTCATCATGATACATTTTGTGCTTCTAGTTAGTCGACAAGGAAAAGTAAGGC TCACCAAGTGGTATTCGCCTTACACACAGAAGGAAAGGTCTAAGGTCATACGCGAACTCAGCGGTGTAATCCTGAACAGAGGTCCC AAGCTCTGCAATTTCATCGAATGGAGAGGATACAAGGTTGTCTACAAAAGGTACGCAAGCCTGTACTTCTGCATGTGCATTGATGA GGCGGATAACGAGTTAGAGGTACTGGAGATCATTCATCACTATGTCGAGATTCTTGACCGTTACTTTGGCAGTGTGTGTGAACTGG ATTTGATTTTTAACTTCCACAAGGCGTATTATATATTGGATGAGCTGTTGATCGCCGGTGAGCTTCAAGAGTCGAGCAAGAAAACA GTGGCGAGGATAATATCAGCTCAGGATCAATTGGTGGAGGCTGCTAAAGAGGAGGCTAGTTCCATAAGTAACATCATTGCTCAGGC TACCAAGTAGTTTCTTTCTGATTTGTTGTTAAAAAGCATTCGTTAATGGTTTAATATTTCCTTATTTTCTGAGAAATTCTATTCTA AATCACACTTTTCTTTTCCATGTTATGTCATGTGTTTTGTCTGTTTGATAAGAAGAAAGAAACATTTATTGATCGGTGTGGGTTTA TGAGTAGTGATTCCTTTGTAAAGACAACATACAGCACATTCTTTGCCATCTACCATGATTGATAAGAGTACTACCGCCAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884054 hypothetical protein ARALYDRAFT_480622 [Arabidopsis lyrata subsp. lyrata]	824	5e-086
NP_565415 AP-1 complex subunit sigma-1 [Arabidopsis thaliana]	820	2e-085
AAB96887 clathrin assembly protein AP19 [Arabidopsis thaliana]	814	8e-085
NP_195267 AP-1 complex subunit sigma-2 [Arabidopsis thaliana]	801	2e-083
XP_002269251 PREDICTED: hypothetical protein [Vitis vinifera]	790	5e-082

Swiss-Prot top hits (Blast detail)	Score	e value
B0G185 AP-1 complex subunit sigma-2	586	9e-060
Q3ZBS3 AP-1 complex subunit sigma-2	499	1e-049
Q9DB50 AP-1 complex subunit sigma-2	499	1e-049
P56377 AP-1 complex subunit sigma-2	496	3e-049
P61966 AP-1 complex subunit sigma-1A	483	8e-048

TrEMBL top hits (Blast detail)	Score	e value
Q8LEZ8 At2g17380	820	1e-085
O24611 Clathrin assembly protein AP19 homolog	814	5e-085
O23685 Clathrin assembly protein AP19 homolog	801	2e-083
A5C1I3 Putative uncharacterized protein	790	3e-082
B7FHG4 Putative uncharacterized protein	777	1e-080

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17380.1 AP19; protein binding / protein transporter	821	5e-088
AT4G35410.2 clathrin adaptor complex small chain family protein	801	1e-085
AT4G35410.1 clathrin adaptor complex small chain family protein	571	5e-059
AT1G47830.1 clathrin coat assembly protein, putative	411	2e-040
AT2G19790.1 clathrin adaptor complex small chain family protein	318	1e-029

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	9			19%


9	6			13%


6	8			17%


12	11			23%


10	4			9%


7	5			11%


8	4			9%

Unigene Members	Member information