RadishBase

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Information for unigene UN17485

FASTA Sequence

Unigene ID: UN17485	Length: 1577		SNP
GGGGGGCTCATAGTCGCTCTTCTCCCCCAAACTCTCCTCCCCTCTTCCCGGCGATCTCTGTTTCTCTCCGATTTGGCTATTGAAAT GGCAACCCCCATGGTAGAAGACACGTCAAGCTTCGAAGAGGATCAGCTCGCTTCCATGTCCACAGAAGATATCATCAGAGCTGCTC GCCTCCTCGAAAACGAGATTCGAATCCTCAAGGAAGACGCACAAAGAACGAATCTTGAATGCGATTCTTACAAGGAGAAGATAAAG GAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTTCCTTACCTGGTTGGCAACATTGTCGAGATATTGGAGATGAATCCGGAAGA TGATGCTGAGGAAGACGGTGCTAATATTGACCTTGACTCTCAACGGAAAGGAAAGTGTGTTGTGTTGAAAACCTCTACACGACAGA CTATCTTTCTACCAGTTGTTGGTCTCGTGGACCCTGATAGCTTGAAGCCTGGGGATTTGGTTGGAGTTAATAAAGACAGTTACTTG ATTCTGGATACGTTGCCGTCTGAGTATGACTCTAGGGTTAAAGCCATGGAGGTCGATGAGAAGCCTACGGAAGATTACAATGACAT CGGAGGACTGGAGAAGCAGATCCAAGAGCTTGTTGAGGCTATTGTGCTCCCCATGACGCACAAGGAGCGTTTCGAAAAGCTAGGTG TTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCTCCAGGGACTGGTAAAACTTTAATGGCTCGTGCTTGTGCAGCACAGACCAAT GCCACTTTCCTCAAATTGGCAGGCCCTCAATTGGTCCAGATGTTCATTGGAGATGGAGCAAAACTTGTCCGTGATGCCTTTCAACT AGCAAAAGAGAAAGCTCCATGCATCATCTTCATTGATGAAATCGATGCAATTGGTACAAAGCGTTTTGACAGTGAAGTAAGTGGAG ACAGGGAAGTGCAGAGGACTATGTTGGAGCTGCTTAATCAGCTTGATGGATTCAGTAGCGATGAGCGTATTAAGGTGATTGCAGCC ACTAACCGTGCAGATATTCTAGACCCAGCACTGATGCGTTCTGGTCGACTGGACAGGAAGATTGAGTTCCCACATCCTACAGAAGA AGCAAGAGCCAGAATCTTGCAGATTCACTCGAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCAAGATCAACAG ACGATTTCAATGGTGCTCAACTGAAAGCAGTTTGTGTAGAGGCTGGCATGTTGGCTTTTCGTCGTGATGCCACAGAGGTGAACCAT GAGGACTTTAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCAAGCTTGAATTACTACGCCTAATCTCTCTCTGCATCATC TGTCTTGTTTCTTTCAAGTAGTTTTGCATTCCGATTGGGATATTTTTCATATTTAGTTGTGTTCATCTTCTTTTCCTGAAAAAGTG GAATTTAATATGGAAACACTACAGTTTCACGTCATCACATTCACATGCATGTCATGTTAAGGAGAAAGCAAAAAGGATTTTTGATA CAGAAGCAACGAATTTTAAAAGAATGTTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
O23894 RecName: Full=26S protease regulatory subunit 6A homolog; AltName: Full=Tat-binding protein homolog 1; Short=TBP-1	2137	8e-238
BAB21595 Tat binding protein like protein [Brassica rapa]	2134	2e-237
NP_187204 regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]	2130	5e-237
AAN15459 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]	2121	5e-236
AAD46145 19S proteasome regulatory complex subunit S6A [Arabidopsis thaliana]	2120	7e-236

Swiss-Prot top hits (Blast detail)	Score	e value
O23894 26S protease regulatory subunit 6A homolog	2137	3e-239
Q9SEI2 26S protease regulatory subunit 6A homolog A	2130	2e-238
P54776 26S protease regulatory subunit 6A homolog	2028	1e-226
O04019 26S protease regulatory subunit 6A homolog B	2002	1e-223
P46465 26S protease regulatory subunit 6A homolog	1993	2e-222

TrEMBL top hits (Blast detail)	Score	e value
Q9AYS9 Tat binding protein like protein	2134	1e-237
B9N4I9 Predicted protein	2054	2e-228
B9I7I1 Predicted protein	2053	3e-228
A5AEY4 Putative uncharacterized protein	2046	2e-227
B7FKW8 Putative uncharacterized protein	2040	9e-227

Arabidopsis top hits (Blast detail)	Score	e value
AT3G05530.1 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding	2131	1e-239
AT1G09100.1 RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding	2003	9e-225
AT4G29040.1 RPT2a (regulatory particle AAA-ATPase 2a); ATPase	843	3e-090
AT2G20140.1 26S protease regulatory complex subunit 4, putative	841	5e-090
AT1G53750.1 RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase	788	7e-084

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	4			31%


7	2			15%


6	2			15%


8	3			23%


9	2			15%

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