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Information for unigene UN17487
| FASTA Sequence |
| Unigene ID: UN17487 | Length: 1078 |
| SNP | GAGAGGGTTTGGTTTTGTTGCTTTCTCCAGTCCTGAAGAAGCTTTGAGAGCTTTGAATGAAATGAATGGGAAGATGATAGGAAGGA
AACCTCTTTACATTGCATTTGCTCAACGCAAGGAAGAGAGGAGGACTCATCTTCAGACTGTGTTTTCTATGAGACCAAATGTACCA
ATGGGTGGGTTTCATCATCACCCAACAGGAGGGCCAGCTGGAGGGCCACACCATCAAATGTACATGGGCCAGAACGGTCAAGGTAT
GGTGCCTTCACAGCCTATGGGGTATGGGTACCAACTTCAGTTCATGCCTGGTGTGCGTCCGGGTGCTGGCCCGGCTAACTACATGA
TGCCTTACCCTCTTCAGAGGCAAAACCATCCTGGTCCCCGTGTTGGATTCAGGCGTGGTGCTCCTAACATGCAGCACCACTTCCAG
CAGCAGCAACAAATTATGCAGCACAATGGAAGATACATGGGAGGTGTTGGTAATATGATGAATCGTGTGGAAGCATCTGCTCCACA
AGGCATCATACCATTGGATGCATCTGCGATCTCTCACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAAGC
TCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTCTTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAG
CCAGTTCATGTGGCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCACCTTCTTGAGTCACCTGAAGCTCT
TAAGGCCAAAGTGGCTATGGCTCTGGATGTACTCAGGCTCTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGATCAGTTTGCTC
CCTCCTCAACGGAGTGAAATGAGTTATTACCCCAAAGAAAAAGACAATGTTTCTTCTGCCTTTTATTAGACTATGCGCTTTGAAAT
TTTTAGGACTTATTTAACCAGTTTTTCTTCTCGTTTGCAACTTTTAGTTTCATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTTT
TTTTCTTTCTTGAGTCTATCTAATGATTCAACTCTTTTGGACCATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888846 hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp. lyrata] | 1059 | 4e-113 |
| XP_002890531 PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata] | 951 | 1e-100 |
| NP_173690 Polyadenylate-binding protein 3 [Arabidopsis thaliana] | 938 | 5e-099 |
| AAC25510 Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from A. thaliana [Arabidopsis thaliana] | 938 | 5e-099 |
| AAN15424 Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis thaliana] | 938 | 5e-099 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q05196 Polyadenylate-binding protein 5 | 1092 | 3e-118 |
| O64380 Polyadenylate-binding protein 3 | 938 | 2e-100 |
| P42731 Polyadenylate-binding protein 2 | 510 | 9e-051 |
| Q5KBW2 Polyadenylate-binding protein, cytoplasmic and nuclear | 217 | 8e-017 |
| Q13310 Polyadenylate-binding protein 4 | 197 | 2e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8H198 Strong similarity to poly(A)-binding protein (PABP5) | 938 | 3e-099 |
| B9GT62 Predicted protein | 634 | 6e-064 |
| B9H7X9 Predicted protein | 632 | 1e-063 |
| B9SM76 Polyadenylate-binding protein, putative | 617 | 5e-062 |
| B6U4M0 Polyadenylate-binding protein 2 | 531 | 5e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT1G71770.1 PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor | 1093 | 2e-119 |
| AT1G22760.1 PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor | 938 | 2e-101 |
| AT1G49760.1 PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | 535 | 1e-054 |
| AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | 510 | 8e-052 |
| AT4G34110.1 PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor | 510 | 8e-052 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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