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Information for unigene UN17556
| FASTA Sequence |
| Unigene ID: UN17556 | Length: 1367 |
SSR | | GGAAAACATCCCAAAAAGAAATGTCTTCATTTCAATCATCTTCTTCTTCTTCTTCATCGGTTTTGCTCAATTGGAGATGGCGACTT
CGATGGTCTCTCCTCTTACCTCACAGCACAACCATGAATCTGTCTGCTCCAAGTTCGCTCTTCCCAAATCACCGTTCGTGTCGGGA
TCTAAGCTCTTCTCCTCGAACATGCCTTGCTCCACTGTTCCAAGACGCACAAGAAGATCAAACTGCTTTGCTTCTGCTAAAGATAT
GAGCTTTGAACACATTCCCAAACAGTTTCGTGGAGACAATCTCAAAGATGGAGTGATGCAGAACTTCAAGAATGTACCCCAGTATT
TCTACGGCCTTAATCCAGCTCAAATGGATATGTTCATGACTGAGGACAGCCCTGTCCGTAGGCAAGCAGAGAAAGTTACAGAGGAA
AGCATCTCGTCTAGAAGTAATTATCTAGACAACGGAGGAACATGGAGTATGTCTGGTATGAATGCAGCAGATCCTAGGAGATACAG
CATGAGTGTCCAAATGTACAGAGGTGGTGGAGGCGGCGGAGGAGGATCTGCAAGACCAAGAACTGCTCCTCCAGATTTGCCTTCTT
TGCTATTGGATGCTCGGATATGCTACCTTGGCATGCCTATCGTACCTGCAGTTACTGAGTTGCTCGTTGCTCAGTTTATGTGGTTA
GACTATGACAACCCAGCAAAGCCTATCTACCTATACATCAATTCACCCGGGACTCAGAATGAGAAGATGGAGACTGTTGGGTCAGA
AACAGAGGCTTATGCCATAGCTGACACCATTTCTTATTGCAAATCAGATGTATACACTATCAACTGTGGCATGGCTTTTGGTCAAG
CAGCAATGCTTCTTTCTCTCGGTAAAAAGGGTTACCGTGCAGTTCAGCCACATTCGTCAACAAAATTGTATCTGCCAAAAGTAAAC
AGATCGAGCGGAGCTGCCATAGACATGTGGATAAAGGCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAA
GGGAACAGGCAAAACCAAAGAACAGATCAACGAGGACATCAAGCGACCTAAATATCTCCAAGCACAGGCAGCCATTGACTATGGAA
TCGCAGACAAGATAGCTAACTCGCAGGATAGTTCCTTCGAGAAACGCGATTATGATGGGTCTCTTGCCCAAAGAGCCATGGGAAGA
CCTGGAGGAGGCAGTCCAACATCTCCAGCCGGACTAAGATGATCAATTAAAAAAAAATACAGAGTTTGAATCTCAATTTGCCTAGT
CACTCTGGAATATGTAGCTGTTACAATCTGTAAGCAAACACAAAGATAAAAGAAACATACAAAAGTTCTCTAGTTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564560 ATP-dependent Clp protease proteolytic subunit-related protein 1 [Arabidopsis thaliana] | 1902 | 1e-210 |
| XP_002894225 hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp. lyrata] | 1899 | 2e-210 |
| XP_002264383 PREDICTED: hypothetical protein [Vitis vinifera] | 1340 | 2e-145 |
| XP_002313173 predicted protein [Populus trichocarpa] | 1320 | 3e-143 |
| ACU20022 unknown [Glycine max] | 1319 | 4e-143 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9XJ35 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic | 1902 | 5e-212 |
| Q8L770 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic | 461 | 6e-045 |
| Q8LB10 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic | 407 | 1e-038 |
| Q7NEW1 ATP-dependent Clp protease proteolytic subunit 2 | 367 | 5e-034 |
| P74466 Putative ATP-dependent Clp protease proteolytic subunit-like | 355 | 1e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C6TDX0 ATP-dependent Clp protease proteolytic subunit (Fragment) | 1327 | 4e-144 |
| B9HMY7 ATP-dependent Clp protease proteolytic subunit | 1321 | 2e-143 |
| B9SND4 ATP-dependent Clp protease proteolytic subunit | 1207 | 3e-130 |
| B8LL17 ATP-dependent Clp protease proteolytic subunit | 1153 | 5e-124 |
| B8LS00 ATP-dependent Clp protease proteolytic subunit | 1146 | 3e-123 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G49970.1 CLPR1; serine-type endopeptidase | 1908 | 8e-214 |
| AT1G09130.1 ATP-dependent Clp protease proteolytic subunit, putative | 461 | 5e-046 |
| AT1G09130.2 ATP-dependent Clp protease proteolytic subunit, putative | 461 | 5e-046 |
| AT4G17040.1 ATP-dependent Clp protease proteolytic subunit, putative | 407 | 9e-040 |
| AT1G12410.1 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase | 192 | 8e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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