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Information for unigene UN17577
| FASTA Sequence |
| Unigene ID: UN17577 | Length: 1237 |
| SNP | GGATTTGAGTTTTCAGATGAACAAACTATAAACATTTTTGGAGAAAAAGTTTTCATTAATGGCTGATATTTCTGATACTTCCCCAC
AAACACAAACTGCCACCTCCTTCGACATCGAAGAAGGTGGATCAGGAGGTGATTTAGGATCATCGGGGTTTTCCCGTCCTCTTCTA
TCCGTATCTTTCGTTCAAAAGTTGATTGGGGAGTTCGTGGGGACATTCTCTCTCATATTTGCCGGTTGCGCGGCTATTGTGGTAAA
TGATACGTACGGTAAAGTGGTGACACTTCCTGGTATAGCTTTGGTATGGGGACTAACCGTAATGGTTATGATCTACTCAATTGGTC
ATGTATCCGGTGCACATTTCAATCCTGCTGTTTCCATTGCATTTGCCTCTTCGAGAAAGTTCCCATTTAAACAGGTTCCGGGGTAT
ATAGCTGCACAAGTTCTCGGCTCAACTTTAGCTTCTGAGGCTCTACGACTTGTGTTCCAGCTGGAGAACAACGTTTGTAGCCTCAA
AGGCGATGTTTATGTGGGAACATACCCGTCAAGTTCCAACATGGCGTCATTTGTTATGGAGTTCATCACTACTTTCAACTTAATGT
TCGTTATCTCGGCTGTAGCTACTGATAAACGAGCCAATGGATCATTCGCAGGCATTGCTATTGGCGCGACAGTTGTACTCGACATC
CTGTTCTGCGGGCCAATCTCCGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGATGTTATAAGGATTT
ATGGTTATACATTGTTTCACCGGTTATTGGAGCATTGGCAGGTGCATGGACTTATGATATGTTACGGTCTACAAACAAATCATATG
GTGAGATAATACGTCCAAATTGCAATAAAGTTTCTTCAAGAGATCGCCAAGAAGCATCTGAAGACGAGATTTGTGTTCTTCAAGTG
GTCAACCAAGCTAACCGGAAAGAATTCATATGTTCATCGCCCACTGATATCAACGACAAAAGAAATGTCACATGCAAGTTGCCGTA
AGATTATTCACAACATGAATTTGTCGTGCTCTATACTTTCAAAACTTAGTTGACAAGTTGCACACACACAAAAGCTTTGTTGACAA
AAAGAATTTCAAAATCTGTTAAATATTTTCTATAAATACAGAGGTTAAAAATAAGGATTGTACTTTGTAAAATATTTTGTAACATC
CCGAGTTGTGATATGTGAAAAAGGTTAAAAGGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_174472 aquaporin NIP3-1 [Arabidopsis thaliana] | 1341 | 1e-145 |
| AAG50717 major intrinsic protein, putative [Arabidopsis thaliana] | 1202 | 1e-129 |
| XP_002890955 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1195 | 9e-129 |
| NP_193626 aquaporin NIP1-2 [Arabidopsis thaliana] | 823 | 1e-085 |
| XP_002870013 hypothetical protein ARALYDRAFT_492969 [Arabidopsis lyrata subsp. lyrata] | 818 | 5e-085 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C6T0 Aquaporin NIP3-1 | 1341 | 5e-147 |
| Q8LFP7 Aquaporin NIP1-2 | 823 | 5e-087 |
| Q8VZW1 Aquaporin NIP1-1 | 785 | 1e-082 |
| Q8W037 Aquaporin NIP2-1 | 725 | 1e-075 |
| Q40746 Aquaporin NIP1-1 | 723 | 2e-075 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9S8F5 Aquaporin NIP1.1, putative | 760 | 2e-078 |
| Q9XGG7 Nodulin26-like major intrinsic protein | 748 | 4e-077 |
| B9I1G4 Predicted protein (Fragment) | 746 | 7e-077 |
| Q8W4T7 Multifunctional aquaporin | 739 | 5e-076 |
| Q6QIL2 NIP2 | 738 | 6e-076 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G31885.1 transporter | 1341 | 4e-148 |
| AT4G18910.1 NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel | 823 | 5e-088 |
| AT4G19030.1 NLM1; arsenite transmembrane transporter/ water channel | 785 | 1e-083 |
| AT2G34390.1 NIP2;1 (NOD26-LIKE INTRINSIC PROTEIN 2;1); lactate transmembrane transporter/ water channel | 725 | 1e-076 |
| AT5G37820.1 NIP4;2 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel | 649 | 7e-068 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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