RadishBase

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Information for unigene UN17614

FASTA Sequence

Unigene ID: UN17614	Length: 863		SNP
TAGGCATGTACCAGATATGCAAGGAAGGAACAGATGTAAGCCAAATGCTACGATGTCCACATACAAATATTTAATAGGCAAGGCAT AAAGAGTAGTATCATATAGCACAAGTTGATTTCGCTTTTAGAGTTTTATTCATGTGACTAAACATATTTGATTCTTTAGTTTTTTT TTCATATTTGGTCACACAAGCTGTGATCTCTTTCTCCATTAATATTCCTCCCATTTCACAGGATCGTGCAACCGGGTTCCTGATTA TAAACTGGTTCCCCTATGTAACTGTTGGGGTTGCACGGGTAGGGAAAGGCGGACGGTACACCGTATCCTTGAGGAGATGGATAACA GGGAGGAGGAGGACATGGATTAGATGGGGGAGGACATGGTTTACATGGCGGCGGGCATGGTTTACAACATGGCGCGGGCTTCTTCT CCTCTTCCTTCTTCTTGTCTCCATCTTTCTTATCGCCATCCTTTTTGTCACCATCTTTCTTGTCACCATCTTTTTTGTCACCGTCC TTTTTGTCCCCATCCTTCTTCTCATCTGGTTTCTTTGGAGGTTCGACTTTGCTTACGCTTACAAGCTCTGCAAAGGCTACCTTCTT TCTCAGCCTTTTGGTGAGGCCGATCATATCAACTTCAGTACCGGTCACCTCTATCTGGTTCCTATGATCGCCTTTTATCTCCACGG CTGACACACCTTTAAACTGAACTGCTTTGGTCATAGCTTTTGCTCGGGTCTTGTCATCAGTCATAGTCACTCTAAACAAGATCTTT TGCTTCATCTTCTTGCTTGCTTGAAGAGGATTGACTACAAGTCTTGAGTTTTGGATCTTGTAGAATACTACAAGTCTGAAGAAATG TCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568695 heavy metal transport/detoxification domain-containing protein [Arabidopsis thaliana]	543	2e-053
AAO22725 unknown protein [Arabidopsis thaliana]	539	6e-053
NP_001032032 heavy metal transport/detoxification domain-containing protein [Arabidopsis thaliana]	501	2e-048
BAA98186 ATFP4-like [Arabidopsis thaliana]	446	4e-042
XP_002863883 hypothetical protein ARALYDRAFT_494881 [Arabidopsis lyrata subsp. lyrata]	442	1e-041

Swiss-Prot top hits (Blast detail)	Score	e value
P0C9V6 CD2 homolog	140	5e-008
Q89501 CD2 homolog	137	1e-007
P0C9V8 CD2 homolog	137	1e-007
Q9UMN6 Histone-lysine N-methyltransferase MLL4	129	9e-007
Q32L04 Late cornified envelope-like proline-rich protein 1	127	2e-006

TrEMBL top hits (Blast detail)	Score	e value
Q5PNZ7 At5g48290	543	1e-053
Q84WQ2 Putative uncharacterized protein At5g48290	539	4e-053
Q9LK84 ATFP4-like	446	3e-042
Q9SSF0 MLP3.5 protein	380	1e-034
Q9ZRE6 ATFP4 (Fragment)	380	1e-034

Arabidopsis top hits (Blast detail)	Score	e value
AT5G48290.1 heavy-metal-associated domain-containing protein	552	8e-057
AT5G48290.2 heavy-metal-associated domain-containing protein	510	6e-052
AT3G07600.1 heavy-metal-associated domain-containing protein	380	7e-037
AT4G05030.1 heavy-metal-associated domain-containing protein	136	1e-008
AT3G22800.1 leucine-rich repeat family protein / extensin family protein	116	3e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	6			60%


9	2			20%


6	2			20%

Unigene Members	Member information