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Information for unigene UN17618

FASTA Sequence
Unigene ID: UN17618Length: 1307  SNP
GGGGAAGCTAGTTTTGTGGAGCTACCATCTCTTCTTGTTGATTCTTCAGAAACACACTGTTCCATTATCTCTCTTACAACAACCAC
ATAAGCAAAAAGCAAACTTGTTTTCAAGATGGAGAAGAAACTGATAATGTTTTTGTTTGTTCTTCTGCAACTGCTGTTAGTAGTAA
ACTCTCTTTCTCCCAAACATTCACCAGCCAAGCCAAAGGCAGAAGTGACTGTAATGGGTTTTGTTTACTGCGATGTCTGCTCCAAC
AACACTTTCTCCACACACAGTTACTTCATGTCCGGCGTGGAAGTGAGAATAGTCTGCAGATTCAAATCAGCTTCATCGAGAACAAA
CGAGATGGTAACATTCTCTGCAAACAGAACCACTAACGAGTTCGGACTCTACAAGGTAGCCATAACTTCTCTAGATTGGGCTGACG
TGGACAGTCTCGCGAGTTCTTGTCAAGCGAGTTTGGTCGGGAGAAGAAGCTCTTCGGATATTTCTTGCAACGTGCCTGGTTATAGA
ACCACGACGGATCAAGTCGTGTTTAAGTCTAAACGGTCTAATCTCTGTATCTATGGGTTCAATGCTTTGAACTTAAGACCCTTCAA
GAGGGATCTTGCCTTGTGTGGCAAGAAATAGAGGTTTTTAAACAATTATCTTCGACTGTTATTGAGTATGTTGCTTCTACTCAGAG
ATATCGTCTTAGCAGCACGAAGAAGATATCGTTTTTATTTAATCAAATAACTGAAAATGCGTTTCTGTTTAAGCCAAAAACAAATA
ACAAAAATTTTAAGAGACAATAACAGTCCTCACAAGTTAATCGTAAGAGTTGATGTTTTAGAGTGTATCATCAAGCTTGACTCATC
TTATTTAAGCAACCAATCCCTTCTTTCATATAGTCCTCTCTATTGATCCAGAACTCTGGTGCGTCCTTCATGATCCCTGCAAGAAC
AGCGCCTCCGAGGTATACCATGTGTTTCCTTCTAGGTGGATCCTCTATCCGCAATCTGAGTTTCTTCGAGCCATCTTTGTTTCCTT
TTAGAACAGTATCGAGATACCGATCCTGGATTTCTTTCTCGAGACTTGAAACAAAGAGAAGACAGAACACATTAAAAGTAAGCCAT
TGAGCTTCTCGTTGCATTATGATAAACACAAACACACAAGAGACAAACCGGCTAGGCAATCCTGGATACATGGTGCTTCCTCCGCT
TAAAACTATGTGTTGATAGAGCGTCATGCGGTTATCAATATCCATTTCTTGAATACAGCGGAAAACCATGTCTGCCATTCCATCAC
CTTCAACGTCAATGAGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_001147157 pollen proteins Ole e I family protein [Zea mays]7343e-075
XP_002875351 predicted protein [Arabidopsis lyrata subsp. lyrata]7138e-073
NP_566805 pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]7111e-072
AAM67149 unknown [Arabidopsis thaliana]7021e-071
XP_002868618 hypothetical protein ARALYDRAFT_355871 [Arabidopsis lyrata subsp. lyrata]5991e-059

Swiss-Prot top hits (Blast detail)Scoree value
Q9LSD6 Actin-related protein 23872e-036
A2YUL5 Actin-related protein 23362e-030
Q6Z256 Actin-related protein 23334e-030
O96621 Actin-related protein 22545e-021
Q56A35 Actin-related protein 2-B2367e-019

TrEMBL top hits (Blast detail)Scoree value
B6SLJ6 Pollen proteins Ole e I family protein7342e-075
Q8L8S3 Putative uncharacterized protein7021e-071
Q9FLM4 At5g410505828e-058
B9RH38 Putative uncharacterized protein4474e-042
C6SZI5 Putative uncharacterized protein4393e-041

Arabidopsis top hits (Blast detail)Scoree value
AT3G26960.1 unknown protein7124e-075
AT5G41050.1 unknown protein5889e-061
AT3G27000.1 ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton3881e-037
AT5G13140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26960.1); Has 90 Blast hits to 85 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).3405e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
117  54%
 
94  31%
 
102  15%

Unigene MembersMember information