RadishBase

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Information for unigene UN17647

FASTA Sequence

Unigene ID: UN17647	Length: 957	SSR	SNP
GGAAACCAGTTGCGTGTTTGGTTATCTTTTCTTTCGTGGTAACCTAAATTAAGGGATTTGTTCTAACAAATCTCTCTAGACTCCAA AAAGGAAGAATCTCACGTCTCTCATCTTCTTCTCGGGAAGATCAGAAAACAACTTCTTTTTGTTTAAATTTCATCTTCAAGCTTCG AAGATCGCAGGAAAAATTTTCGTTTCGATCTGACCATTTCTGGTGAGAAGGCAGGATTTTAAAAGACGACAACAACAACAACAATG AGCTCTGAGCAAAACAACAGCACAAGCTTCCCACCAACAGAGCCAAAGCTCTGCGATAACGGATGCGGATTCTTCGGGTCACCCTC CAACATGAACCTTTGTTCCAAATGTTACCGAAGCCTACGTGCCGAGGAAGATCAAACGGCAGTGGCCAAAGCTGCGGTGGAGAAAT CACTAAAGCTTCCCTCTTGCAGTCTCATCACCGCGCCAGAGCCGAAACAGCCTCTGGAGACGGAACCAGTCTCGGTGGAAACCGTT GTGATCGCTGAACCGACTTCTGTTCCTCCTGTAGCTACGGGACAGGAGGAGGGAGAGCCGTCGAAGCCTGCACGGCCTAACAGGTG TTTCAGCTGTAACAAGAAGGTTGGAGTTATGGGGTTTAAGTGCAAATGCGGGAGCACGTTTTGCGGGAGCCATAGGTACCCGGAGA AGCATGAGTGTAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATCCTGTGGTCAAGGCGGATAAAGTCCAG AGGATTTGATTGTGATGTGATGTGTCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCGATGTTGGGTTTC TATGAATCAAAATGAAAAAATTGCTGCTATTGGTTTTCTCATGAATCCTTTTTAGTGCTTTTAACTCTATTGAAATGGAGTCTCCC TTTGCCTGCTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABL97956 zinc finger A20 and AN1 domains-containing protein [Brassica rapa]	909	9e-096
XP_002872640 hypothetical protein ARALYDRAFT_490023 [Arabidopsis lyrata subsp. lyrata]	796	1e-082
NP_192941 zinc finger A20 and AN1 domain-containing stress-associated protein 7 [Arabidopsis thaliana]	774	4e-080
BAH19860 AT4G12040 [Arabidopsis thaliana]	769	2e-079
NP_194013 zinc finger A20 and AN1 domain-containing stress-associated protein 9 [Arabidopsis thaliana]	595	2e-059

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SZ69 Zinc finger A20 and AN1 domain-containing stress-associated protein 7	774	2e-081
O49663 Zinc finger A20 and AN1 domain-containing stress-associated protein 9	595	1e-060
Q6NNI8 Zinc finger A20 and AN1 domain-containing stress-associated protein 1	534	1e-053
Q9ZNU9 Zinc finger A20 and AN1 domain-containing stress-associated protein 3	397	9e-038
Q8H0X0 Zinc finger A20 and AN1 domain-containing stress-associated protein 2	391	5e-037

TrEMBL top hits (Blast detail)	Score	e value
A1YMZ7 Zinc finger A20 and AN1 domains-containing protein	909	6e-096
B9DGJ3 AT4G12040 protein	769	1e-079
B9GVU5 Predicted protein	533	2e-052
B9MST8 DNA binding/zinc ion binding protein	530	5e-052
B9GKT2 Predicted protein	504	6e-049

Arabidopsis top hits (Blast detail)	Score	e value
AT4G12040.1 zinc finger (AN1-like) family protein	775	1e-082
AT4G12040.2 zinc finger (AN1-like) family protein	775	1e-082
AT4G22820.1 zinc finger (AN1-like) family protein	596	7e-062
AT4G22820.2 zinc finger (AN1-like) family protein	596	7e-062
AT1G12440.1 zinc finger (AN1-like) family protein	535	8e-055

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	4			40%


10	1			10%


12	3			30%


9	2			20%

Unigene Members	Member information