RadishBase

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Information for unigene UN17685

FASTA Sequence

Unigene ID: UN17685	Length: 947	SSR	SNP
GACATTGCGATGTTAAATTATAACTAATCACAGAGATGAATTTTGACCTTACAGAATCGTAAAACTTCAAAAAAAAAGTATGGAAA ACAAAGCTTAGAATTTCGAATGCAACTCATAAATGATATTTTGTGACACTACATGATTGAAAATATTGTATGGAACCCAAAAGAAA ATGAGCTAATAGTTCGTTAGAATCTGTAATCATTCAAATGAACTGAAAGAAACCTTTTTGCTTGGTTTAGCATTCACACCCTGTTG ATCTGTGTTGCTGACCTCCAGCAACATCAATCGTGTCGGGTAGGTACGGTTCTTCTTCAGGTTCATTCTTGAAAGCATTTTTGGTG ATGCACTCGAAAGCTGCGTCTACATTGAATCCTTCTTTGGCAGATGTCTCAAAGTAAGGAATGTTTCCTTTTGACGCACACCAGGC CTTTGCTTTCTTCTCAGAAACCACTCGGCTTTTGCCACCATCAACGTCGGTCTTGTTCCCCAAGACGACAAACGGGAAGTTGTCAG GATCTGATGGACCAGCCTGAATCAAGAACTCTTCCCTCCAGTTATTAAGATTCTCGAAAGATTTCATAACATTGACATCGTACACA AGAACACAACAGTCAGCTCCTCTGTAGAACGCAACTCCCAAGCTTTGGAACCTTTCTTGTCCCGCAGTATCCCAAATCTGTAAAGT GAAGATGCGGTCATCGATTTGAACCTCTTTAGTCAAGAAATCAGCTCCAATCGTGGCTTTGTACTGATTACTAAACTTGCGGTTCA CAAACTGATTCATCAACGATGTCTTCCCAACCCCGCTATCGCCGAGGATGATAACCTTAAGAAGAACTCTCCGGCGAGAAGACATT TGAAGACGGAAGGGTTGATGATGATGATGATGATGATTAGTTTATTTGATTATCCTTTTTTTGTTACCGGCGAAGAAAGTGCCTCC C

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_175638 RAB GTPase homolog G3D [Arabidopsis thaliana]	1069	2e-114
XP_002882978 hypothetical protein ARALYDRAFT_479064 [Arabidopsis lyrata subsp. lyrata]	1023	5e-109
NP_188231 RAB GTPase-like protein G3C [Arabidopsis thaliana]	1014	6e-108
XP_002516039 protein with unknown function [Ricinus communis]	992	2e-105
XP_002284408 PREDICTED: hypothetical protein [Vitis vinifera]	991	3e-105

Swiss-Prot top hits (Blast detail)	Score	e value
Q9XER8 Ras-related protein Rab7	989	2e-106
O24461 Ras-related protein Rab7	985	6e-106
Q40787 Ras-related protein Rab7	942	6e-101
P31022 Ras-related protein Rab7	917	5e-098
P93267 Ras-related protein Rab7A	916	6e-098

TrEMBL top hits (Blast detail)	Score	e value
Q9C820 AtRab72	1069	2e-114
Q9LW76 At3g16100	1014	4e-108
B9RQM0 Putative uncharacterized protein	992	1e-105
B7FN46 Putative uncharacterized protein	990	2e-105
C6SWS6 Putative uncharacterized protein	986	7e-105

Arabidopsis top hits (Blast detail)	Score	e value
AT1G52280.1 AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding	1070	8e-117
AT3G16100.1 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding	1015	2e-110
AT3G18820.1 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding	924	6e-100
AT1G49300.1 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	909	4e-098
AT1G49300.2 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	909	4e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	3			50%


7	3			50%

Unigene Members	Member information