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Information for unigene UN17702

FASTA Sequence
Unigene ID: UN17702Length: 2220 SSRSNP
GGAAGAAAGAGAAACGCTTTTCAAGTTGTGTCTATCTGTCTCCACGATTCACGCCTTGAGTCTTGACCCCTCCTCCTCCTCATCAT
TTCCCCTCTCTCAACAAAGCAATTCGTTCATCGTTGCGTTGGAGAAATCAACGAAGAGAGAGAGAAGATGAGTTTTCAAGATTTAG
AAGCAGGGAAAGGAGGAAGATCGAGGAAGATGAATGGAGGTGGTGGTCGCCAAGATTCGACGCAAGCCGTCGCTTCCGGTATCTTC
CAGATCAATACCGGAGTCTCCACCTTTCAGCGGCTCGTTAACACGCTCGGTACTCCCAAAGATACCCCCGAGCTCCGTGACAAGCT
GCACAAGACACGGTTGCATATTGGTCAGCTTGTGAAGGACACTTCTGCTAAGCTTAAAGAAGCTAGTGAAACTGATCATCGAACCC
GTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAAGGACTTTCAAGCTGTGTTGAAAGAGTTTCAGAAAGCTCAACAG
ACTGCTGCTGAAAGAGAAACCGCTTATGCTCCTCTCCTCCCTCCTTCTTCTCTTCCCTCTAGCTATACAGCGAGTGAAGTAGACAA
TATTCCTGAACAGAGGGCACAAGTTATGGAGTCAAAAAGGCAGGAACTTGTGTTGTTAGACAACGAGATTGCATTCAACGAAGCTG
TGATCGAAGAAAGAGAGCAAGGGATACAAGAAATCCACACTCAAATTGGCGAGGTTAACGAAATTTTCAAAGATCTTGCGGTTCTT
GTTAACGATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCTCGAGCTGCAACTGCTCAAGGAAAATCTCAGCT
CGCTCAAGCCTCCAAAACCCAAAGATCAAACTCATTTCTGACATGCTTGCTCTTGGTGATATTTGGCATTGTACTCCTGATCGTGA
TCATCGTACTCGCAGCTTGATTTTGGAAAAGCAAGAACCAAGTCTTTCAATGTGTTCAACGAGTGAGTGCGACTACTTTGGTATAT
ATAAGATAAATTTGCAGACAAAAAGCGTAGAAGTTGGGTTTTGTATTGGTTCGGTTTGAGGATTTATTGGTGAATGTAACAGAGTG
CGTGTGTGTGTGTTGTTTTCTTTGTGGTGCAAACTATTTGTTGCGAGATATTGATTTTTTTTTTTTCAAATGGTATTGAGAGTTGA
GAGGAATCAAAAACGGTTTGTCCAATGACTATCACAATTTACAAAGAAGACGAAAAGCTGATTCATAACTGCTTTGTGTTCTTACA
AGATTCAACCTTTGAGCTCAAGATAGATGCAACAAGGATTGAAACTGCGGATAAAACCGCAGCAACAAATGTAACGACAGAAACAT
ACTCGGTATGACTCCTGATTCCTGCAGGAATTTCCCACACAACTGATCTGGTTTCGCTCTTCGAACGGCCAATGGACAAAACCAAA
CATCTTCTTTGTTCTTGTCCCTGGTTAGATACCGAGCACAGGAACAAGTCTGGTTCTCCAAACTCCACTCTAGAGTATCCACTCTC
CCCAATAGGCTGATACCGAGCATGTAAAGGAAGCTTAACGCTGATTTCACCATTTCCATTGATTTCGACATGAATCTCAACAACAG
ACCTGTTTGATCTGAACGAAGGCTGCTCGAGATCCGTGTCTCCAAACACAGATACGTCTCTGAAAGCTCTACGTTGTTGAAGACTC
TGAAGCTCAAAAGGATCAGCAAAAACACCCAAAGGCAACCGTTCAACGACCACAAGCTCGTGAAACTGAGACTTTGAGTGAAAAGG
ACGAAGCTTGATGGTTGTGAGTAGATGACGATGCGAACCTTCACCTGTTATGTCTCTGTGTTGTAGCATTGCTACAGCAGGAGCAT
CATCTTCATAAGAAATGTTCTCAGAACATTGTCGAAGACGCAGGAAGCTTCGAAACTCTGACTCGTTTAAGGAGGAGCTCTGTGTC
GTGAAATAGGACTGCATGACGTAATGATCCGAGATACAAAACGTGTCCGAATCGGACATTCCAACATGAGTAGTTGAGATGGAATT
AAAGCATGACATCGCGAAGAAGATGTAGATCGCGGATATCACTGATCTCCCGCGTTTGCTACCCATCGAATGGTTTTTCAAATCGT
GAATTGGGAATGAAAGAAAGGGGAGAGATAGAGAGAGACTAGATAACTCTGGATTCCTTTTGTTTCATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002863386 hypothetical protein ARALYDRAFT_494291 [Arabidopsis lyrata subsp. lyrata]11791e-126
NP_568671 syntaxin-22 [Arabidopsis thaliana]11772e-126
D71447 probable syntaxin - Arabidopsis thaliana10544e-112
AAN03474 syntaxin [Glycine max]10411e-110
ACU18736 unknown [Glycine max]10402e-110

Swiss-Prot top hits (Blast detail)Scoree value
P93654 Syntaxin-2211771e-127
O04378 Syntaxin-239441e-100
Q39233 Syntaxin-217924e-083
Q9C615 Putative syntaxin-245461e-054
Q3ZBT5 Syntaxin-73302e-029

TrEMBL top hits (Blast detail)Scoree value
Q8LJR4 Syntaxin10411e-110
C6TA84 Putative uncharacterized protein10401e-110
Q3HRZ4 Syntaxin-like protein10382e-110
B9MU58 Predicted protein10373e-110
B9SNS6 Syntaxin, plant, putative10355e-110

Arabidopsis top hits (Blast detail)Scoree value
AT5G46860.1 VAM3; SNAP receptor11876e-130
AT5G46850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233); Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).9592e-103
AT4G17730.2 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor9502e-102
AT4G17730.1 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor9449e-102
AT5G16830.1 SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor7924e-084

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  18%
 
63  27%
 
82  18%
 
102  18%
 
92  18%

Unigene MembersMember information