Information for unigene UN17715
| FASTA Sequence |
| Unigene ID: UN17715 | Length: 1053 |
SSR | SNP | TAGCAGTAGTAATAAACAAAACAATTTGCATCATTTAGTATAAAAATACACAACTGTAAACGCAAACAAGAGAACGTGATAGATAA
TACAAAAGGTAGCAAAGACATATAACTTTTATCACACAGAAAGCCAGAAACGGATAAATAAAACATTCACACCATTCGTTCATCAG
GGACAAAGATTTGGTCGTGTTTTAATAGATACAGAGAGGATTATTTGGTGAGTTTGAAGTACAAGATGAGGAAAATAGCGGCGACC
AAAGCGGTGATAATGGCTCCAATGGTCCATTTGTTCCTGTTCATCCTCCTCGTCATGCCCGTCAAGATTTTCTTGCTCTTTCCGAC
ATTTTCGTCTACTCCACTAAGCGTGTCGCCAGTGCGAAGGAGAGACTGTCTCTGACTGTGCAAGTCTTGGAGGACAGAGACGCCAA
GCTCTTCAGTCTCAATCATCATTCTTCGACTGTCCTTGATTCTATCAGTGGTACGACCCAATCGATCAGTGGACATCATCAATCTC
GCTCTTTGATCAGCTGAAGCCGTCTTAGTGTCAGCAAGGCCAGCTTCGAGCAAGTCGTCACGAGCAGCAGCGTTCAAGTTAGCAGA
GGAGGTGATAGTCTTGAGTTCGGTTTTGAAGTTGTTGAGATCAGACTTGAACTCTCTTAATTTGACAAGGAGGGTGGTCTTAACGC
TCGGTGGGAGGCTCCTCGCCTCAACATCCATTTTCCTAATCAAAGCTTCAGCATTATCGAGGCCAGACCTTATTTCAGAGAGCTTC
TGCTTCTTTTGCTCTCCGTGGAGGGAAATAGCAGAGGAGCATTTCTTGGAAAGATGGGCGGAGAGGTCGCAGTATTGGCGCTCGTA
TCCGTTAAACACCTCACTCATTCTGATTGATTGATTGATACTCTCTCTCTCTCTCTTCTGATAACACGAAGCACCCTCGGAATCGG
AAGATAGAGATCCAAAGGTAAGGTAAGGAAAGACGACGGCGATGAATTTGTTGATGGATTGAATGTTATTATTATTTTTATTTTTC
TTTCTGGGGATGGTCGGAAAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ34483 unnamed protein product [Thellungiella halophila] | 950 | 2e-100 |
| XP_002870775 v-SNARE AtVTI1a [Arabidopsis lyrata subsp. lyrata] | 921 | 4e-097 |
| NP_198767 vesicle transport v-SNARE 11 [Arabidopsis thaliana] | 920 | 6e-097 |
| AAF24061 v-SNARE AtVTI1a [Arabidopsis thaliana] | 916 | 2e-096 |
| XP_002877155 vesicle transport v-SNARE 13 [Arabidopsis lyrata subsp. lyrata] | 875 | 9e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SEL6 Vesicle transport v-SNARE 11 | 925 | 6e-099 |
| Q9LVP9 Vesicle transport v-SNARE 13 | 870 | 2e-092 |
| Q9SEL5 Vesicle transport v-SNARE 12 | 648 | 8e-067 |
| O89116 Vesicle transport through interaction with t-SNAREs homolog 1A | 297 | 4e-026 |
| Q9JI51 Vesicle transport through interaction with t-SNAREs homolog 1A | 287 | 6e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q307Y3 Vesicle transport v-SNARE 11-like | 797 | 7e-083 |
| B9SVJ2 Vesicle transport V-snare protein vti1a, putative | 795 | 1e-082 |
| C6T736 Putative uncharacterized protein | 793 | 2e-082 |
| C6TGN3 Putative uncharacterized protein | 793 | 2e-082 |
| Q3HVM2 Putative uncharacterized protein | 790 | 5e-082 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G39510.1 SGR4 (SHOOT GRAVITROPSIM 4); receptor | 926 | 4e-100 |
| AT3G29100.1 VTI13; SNARE binding / receptor | 684 | 5e-072 |
| AT1G26670.1 VTI1B; SNARE binding / receptor/ soluble NSF attachment protein | 648 | 7e-068 |
| AT5G39630.1 vesicle transport v-SNARE family protein | 420 | 2e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Software error:
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For help, please send mail to the webmaster (feibioinfolab@gmail.com), giving this error message
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