RadishBase

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Information for unigene UN17719

FASTA Sequence

Unigene ID:UN17719

Length: 1354

ATACCACTGAGAATTTTGTTGATGAATAATAAAAAATTTGCAGACATTATTTTGTTACTGTCTAATAATGAGTCTGAGAAGAAGAA
GATCATAAGAACATAAAAGGTTTAAGAAGAGAAATGGTAAGAGTTCAAATAAGATGATGATAATATAACATTTAGACTTTCTTTTT
TTTTGGCCTCTGAACAAAGTCTCAGGGAGCTTCAAATGTCTCTCTCCCGCCAGGTTCTAACTCTTTTCGATCATAAGAACCGGGGC
CTCCGATCCGCAGGCTTAAGAATTTGGAAAGAGCACATCAAACTCTCATCAACACTCATCATCGCACCAGCATTGTCGAATTCACC
ACAGTAGTTTGGAGCTGAGAATATAGTAACAAGCTGTCTATCTGCAAAGAACTCATACCCATCCTCTACAACCTGGTGGGCACGAC
AGATGAGATCCATATCGTTCTTGATAAGAAACTCAGCAACTTTGTCAGGCCCAAACGTGTAAGAGACACCACGGTCGTTCATCCCC
CAGCCTTTGACATCTTTGCTCGGATCAGACCAAAGCAGATCACATAACAAACCGGTGTCCGGAACATCGGTAGGTCTCTTAATAGT
CTTGATCTGCTCCACGCTGGTCAAATCGGGAGAAAGGCCACCGTGCATACACAGTATCTTATCGTCTATCACAGCAGCCACCGGGA
GGCAGTTAAAAGAATCCGTAAACACTTTCCAGAGCCTCACGCTGAACCTGCGTTTGCATTCGTCGTAGAATCCGTAGATTCTGTTG
ATGGAAGCGCACTCGTGGTTGCCTCTTAGGAGGAAGAAGTTCTCAGGGTATTTGATTTTGTAGGCGAGGAGGAGACAGATGGTCTC
TAAGCTCTGCTTCCCGCGGTCCACGTAGTCTCCTAAGAAGAGGTAGTTGGCTGTAGGAGGGAAGCCTCCGTACTCAAACAGCCTCA
GTAGATCTGAGTACTGTCCATGTATATCACCGCAGATCTTGATGGGAGCTTCGAGCTCAAGGAGGTTAGGCTGTTGAAGGAAAATC
TCTTTGGATACGAGACAAAGCTGTCGGATCTCAGACTCGTTGAGCATGACCTGTTTGGTTCCAGGCTTAGGGTTTCTGTAATCCAA
CAGACGACGGATGATGTCGTCGAGAACGGCAGGGTCCATGCTTCCCTGCGCCATTCAAAAGAGAACACGATCCAAAACAACACCCT
TCTGTCTACACAACAAAAAGTTTCAACCTTTCGGACAGTAATCGATCGCGCAGATAGCCAAAAAAGAAGATGATGATCTGTGTCTC
GATCTTTGGACCATAAAAGTTTTCGCCTTTGTTTCCTCCAAGTTTACTTTTTTTTTCTTTTTTC

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
XP_002866317 predicted protein [Arabidopsis lyrata subsp. lyrata]	1615	2e-177
NP_200724 serine/threonine-protein phosphatase PP1 isozyme 2 [Arabidopsis thaliana]	1613	4e-177
CAA78153 protein phosphatase 1A [Arabidopsis thaliana]	1605	3e-176
NP_190266 serine/threonine-protein phosphatase PP1 isozyme 5 [Arabidopsis thaliana]	1527	3e-167
XP_002877515 predicted protein [Arabidopsis lyrata subsp. lyrata]	1525	6e-167

Swiss-Prot top hits (Blast detail)	Score	E value
P48482 Serine/threonine-protein phosphatase PP1 isozyme 2	1613	1e-178
P48485 Serine/threonine-protein phosphatase PP1 isozyme 5	1527	1e-168
P48489 Serine/threonine-protein phosphatase PP1	1450	1e-159
O04857 Serine/threonine-protein phosphatase PP1 isozyme 2	1419	5e-156
P48484 Serine/threonine-protein phosphatase PP1 isozyme 4	1415	1e-155

TrEMBL top hits (Blast detail)	Score	E value
B9DHU3 Serine/threonine-protein phosphatase	1613	2e-177
Q8LBH8 Serine/threonine-protein phosphatase	1512	1e-165
B6REN0 Serine/threonine-protein phosphatase	1453	9e-159
Q10NJ4 Serine/threonine-protein phosphatase	1450	2e-158
Q9SPE2 Serine/threonine-protein phosphatase	1447	4e-158

Arabidopsis top hits (Blast detail)	Score	E value
AT5G59160.1 TOPP2; protein serine/threonine phosphatase	1614	1e-179
AT5G59160.2 TOPP2; protein serine/threonine phosphatase	1614	1e-179
AT5G59160.3 TOPP2; protein serine/threonine phosphatase	1614	1e-179
AT3G46820.1 TOPP5; protein serine/threonine phosphatase	1528	9e-170
AT2G39840.1 TOPP4; protein serine/threonine phosphatase	1415	1e-156

EST library breakdown for ESTs in the assembly


12	2			7%


6	4			15%


10	2			7%


11	5			19%


8	4			15%


7	2			7%


21	6			22%


9	2			7%

Unigene Members