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Information for unigene UN17727
| FASTA Sequence |
| Unigene ID: UN17727 | Length: 1829 |
SSR | SNP | GGGGGAAGCGCTCTCTCTCTCTCTCTCTTACTAAATATATCTCTTAACTCTCTTCTTCTTGTTCTTCTTCACGAGATTAAGGATGA
ATGAATTTGGAGCTAAGTACGAATGTTTGTTCTTTGATATGGACGATACTCTATACCCTTTGAGCATTGGAATCAACTTAGCATGT
CGAAACAACATCCAAGAGTTCATGCTTAATCAACTAGGGATCGAAGAGAGTGAAGTTCCGAAGATGTGTCTTGATCTTTACAAAGA
ATATGGAACCACCATGGCTGGTCTCAAGCTCATGGGTTATGAGTTCGACAACGATGAGTTCCACGAGTATGTGCATGGAAGACTTC
CCTACGAGAAACTAAAGCCTGATCCCATCCTCCGTAACCTTCTTCTCTCTATGCCTCACCGTAAGATCATCTTTACTAATGCAGAC
AAAGCTCACGCGACACGAACACTTAGCCGTTTGGGTCTAGAAGACTGCTTTGAAGGAATCATTTGCTTCGAAACACTAAACCCTTC
TTCTGACACAACCACTCAGATCCTCTGTAAACCCTCTGTTCAAGCCTTTGAAGCAGCCATACGCATAGTAGGCATCATCGATCCAC
GCAAAACGATGTTCTTGGATGACAGTGTTCGTAACATCGCTAGTGCTAAAGCAGCAGGGCTAAAAACCGTGTTCGTGGGTGACTCG
GTGCTAGTTCCAGGTGCAGACCATGCACTAAGCAGCATTCACAACCTTAAGGAAGCTATACCTGATCTATGGGAAGACAACAAAGA
TGATAAGCTCGAGGCGATTGTTCAGCAAGTGGCGGTTGAAACCATGGTTCAAGCTTAAAAGACAGACACTTTTAAATAAGAATCTT
ACATGTGATTAAGAGGAACCTTTCATTGTACTTTCAAACTCATATGTAATCATAAATAAATAAAAACATAAGACCATCATAACTTG
AAACTCTCATAATAGCAAAAACAAAGATACAACATTGAAGGCTTCAAGCTTCAAGTGGGAGCTCTCCGCAGGCATAGATTCTGCAA
CCTTTCTTGGGAACATTGAAGGCGCGTGTCTCCTGAGATTCAAGTGTCCTCACAAGCTTCATACCTTCAAGGACTTGTCCGAACAC
AACATGCTTGTTATCTAACCATGAAGTTTGGACAGTGCAAATGAAGAACTGGCTTCCATTAGTATTAGGACCAGCGTTGGCCATGC
TCAAGATTCCAGGTCCAGTATGCTTCAATGTGAAGTTTTCGTCTTCGAATTTGGCACCGTAGATACTAATACCTCCAGTACCATTT
CCCTCGGTGAAGTCACCTCCTTGGATCATGAAATCTTTGATGATACGATGGAAGGAAGAACCCTTGTATCCATACTTCTTCTCACC
AGTACACAAGACACGGAAGTTTTCAACGGTTTTAGGCACGACATCACCAAACAGACCCATCACAATCCTTCCAGCGACTTCACCAC
CAATCTCCACATCAAAGTAAACCTTGTGTGTCACTTTAGCCTGAGGTGGTTCTAGCACTTCTTCTTCCTCAGCAGCCATTGATTTA
ACACAAGCTGTTCTTTGGTTCTTGATGGTCGCATAAGCTCCGGAGAATCGCTTGAGAGGGAAACTTGCTGCATAGTGTAGTCTCGA
AGACAATGCAGATCCGACACAAACTGATTGAGTTGTTTGCTTTGCTGAAACTAACTGCGATTTGACAACAATCTGAGCAACAGAGT
GAGAAGTGTGAACCATCTGCATTGAAGACAGAGACGCCATTGATTGGTGACTAAGAAGATGACTTTAGTGTTTTGCTTTGACAACA
GTCTCTAGTTTCAGATAAGAGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191763 haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] | 1189 | 8e-128 |
| NP_001154684 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1166 | 4e-125 |
| NP_191762 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1159 | 2e-124 |
| AAM63944 peptidylprolyl isomerase ROC4 [Arabidopsis thaliana] | 1156 | 5e-124 |
| AAG40378 AT3g62030 [Arabidopsis thaliana] | 1155 | 7e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P34791 Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic | 1159 | 1e-125 |
| Q41651 Peptidyl-prolyl cis-trans isomerase, chloroplastic | 719 | 1e-074 |
| Q9ASS6 Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic | 681 | 3e-070 |
| Q6C4W6 Peptidyl-prolyl cis-trans isomerase B | 601 | 5e-061 |
| Q01490 Peptidyl-prolyl cis-trans isomerase B | 598 | 1e-060 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M262 At3g62040 | 1189 | 5e-128 |
| C5X396 Putative uncharacterized protein Sb02g040450 | 882 | 2e-092 |
| B6TQ05 Catalytic/ hydrolase | 854 | 4e-089 |
| B9GRV8 Peptidyl-prolyl cis-trans isomerase | 803 | 3e-083 |
| B9RN18 Peptidyl-prolyl cis-trans isomerase | 803 | 3e-083 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62040.1 catalytic/ hydrolase | 1190 | 2e-130 |
| AT3G62030.2 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) | 1167 | 1e-127 |
| AT3G62030.1 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) | 1160 | 6e-127 |
| AT5G13120.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | 681 | 2e-071 |
| AT5G58710.1 ROC7; peptidyl-prolyl cis-trans isomerase | 585 | 3e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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