RadishBase

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Information for unigene UN17748

FASTA Sequence

Unigene ID: UN17748	Length: 885	SSR
GGTGGGAGAAAGAATTGTTGAGATCGCCGTTTGGATCGGGTTTCTGTGAACCCATCGGAAAAATAAAAAAAAAGGGAGAGAGAGAG AGAGAACCAAACTGAGAGTTTCTCTACTGTTACTTTCGACGCTTCCAACCTCTTACCTTTGTCCGAATGAAATCATCAGTTACGCA CAAGGAATGACGAGTATCTCGTCATCTAAGGAGCAAGCTCAAGATCCGCCTGAATCCTCCGAGCCCACTTTGAAATCCCTCAGAAC CAAGATGACCAAATCCGACGAAAAGAAGAAGCTTAAAGACATTGAGATAAGCGTTCCACTTGTCTATGGTAACATTGCTTTCTGGC TCGGCAAGAAGGCTAGCGAATACCAATCTCACAAATGGGCTGTATATGTTCGTGGGGCAACAAACGAAGACATCAGTGTTGTAATC AAGAAAGTCGTCTTTCAGCTTCATTCTAGTTTCAACAACCCCACAAGAGTCATCGAGGAGCCTCCATTCGAGGTCTCCGAATCTGG CTGGGGAGAATTCGAGATTGCTATCACATTGCATTTCCACAGCGACGTCTGTGACAAGCCATTGAGTTTATATCATCACTTGAAGT TATACCCAGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTTGTCGAACACTACGACGAGATCGTGTTTCCTGATCCT TCTGAAAGTTTTCTTGCTAGGGTTCAGAATCACCCTGCTTTGACGTTTCCTAGATTGCCTTCTGGTTACAACTTGCCTGCTCCTAT GCAAGTCGATGATAACGGGAAAAAGAAGAGAGTGATACTAAAGATCATAGCTTGGGACATGGTTCACGAGCTTCTCTGAGCCGATG AGTTGTTACAGCTTGCGGCTGCTCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001190475 YEATS family protein [Arabidopsis thaliana]	1063	1e-113
NP_199373 YEATS family protein [Arabidopsis thaliana]	1051	3e-112
XP_002865236 hypothetical protein ARALYDRAFT_494425 [Arabidopsis lyrata subsp. lyrata]	1048	6e-112
XP_002306148 predicted protein [Populus trichocarpa]	873	1e-091
XP_002275472 PREDICTED: hypothetical protein [Vitis vinifera]	820	2e-085

Swiss-Prot top hits (Blast detail)	Score	e value
Q755P0 Protein AF-9 homolog	353	1e-032
O95619 YEATS domain-containing protein 4	341	3e-031
Q9CR11 YEATS domain-containing protein 4	341	3e-031
Q5BC71 Protein AF-9 homolog	299	2e-026
Q10319 Protein AF-9 homolog	294	7e-026

TrEMBL top hits (Blast detail)	Score	e value
Q9FH40 Putative uncharacterized protein At5g45600	1051	2e-112
B9H0Z7 Predicted protein (Fragment)	873	8e-092
B9RG64 YEATS domain-containing protein, putative	808	3e-084
C6THJ8 Putative uncharacterized protein (Fragment)	743	1e-076
C6TC74 Putative uncharacterized protein	736	6e-076

Arabidopsis top hits (Blast detail)	Score	e value
AT5G45600.1 GAS41; protein binding	1051	1e-114
AT2G18000.1 TAF14 (TBP-associated factor 14)	579	6e-060

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			50%


9	1			50%

Unigene Members	Member information