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Information for unigene UN17770

FASTA Sequence
Unigene ID: UN17770Length: 879  SNP
TTACTGATATCTCAATCTTTCAATAAAGATTGAGGAAGTAGAGACATGTGTGAAATGATCTTTTTCCATAAAATTCAAAAGCAAGT
AGCAGCAAAATCTTTCAAGGATAACAAAAACAGAGTCTGATACACAAAGATTAAGATCAAAACGATGAAGGCAAGATAAAGAGGAA
GGATCTCCTCACTTCTTCTCCTCTTTCTCAGCATCGGCAGCTCTCTTGGCTCTAGCACCTGCATGTCTCTGGTTAGTGCGCTCCAG
ACGAATCTTGTCATAAGCCTTGAACGATTTCATCTCAGCGGTAAGCTTCACAAGCTCCGTTGCAGGCTTCTCACGGACAATTGGCA
TGTAGTCACCCTGGACTTGAGTGGCATTGGCCAACTCCTCTGGAGTAGAATCACCAGCCTTGACCTTCCTGGCACGACGCGGGAAG
ATGACCAACTTAGCCTTGTAGGTTTTCAGCCTCTGGACATTGGATTGAAGACCCTCGAGAGATCTGTTCTTGCGGCGATGGTCAAC
AGAAATACCGATGGTTGGTGCCAACTTCTTGGGGATTCCAGCAGCCTTGAGCTCTTCAAGAGTGAACCCTTTACCGGTTCTGACCT
TCATGTTGTACTTGAGTGTCTGACCGTGCACAACAGGACGGAGAGGTCCAGAAGTGGGACGGGGGAAGATCTTCACAGCCTTCTTT
TGCCTCGCAGCTCTTCTTCTGGTTTTCCTGGCAGGCTGGTTGAACCAAGTCTTGACATAGTTCTGCCAGTGCTTCTTGAAGTGACC
ATTCGGGATGACATTGTTGTGCTTCATTCCTTCACCTCAGAAGTTGCTTCCTTCCTTTCTCCTGCGGCCGAGACGAGAGAAATGTC
TTCTACCTTTCTTTGATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877641 ATBBC1 [Arabidopsis lyrata subsp. lyrata]10235e-109
NP_190470 60S ribosomal protein L13-1 [Arabidopsis thaliana]10226e-109
P41128 RecName: Full=60S ribosomal protein L13-1; AltName: Full=Cold-induced protein C24A10163e-108
AAM61490 60S ribosomal protein L13, BBC1 protein [Arabidopsis thaliana]10163e-108
ABL97945 cold induced protein [Brassica rapa]10154e-108

Swiss-Prot top hits (Blast detail)Scoree value
P41127 60S ribosomal protein L13-110223e-110
P41128 60S ribosomal protein L13-110161e-109
P41129 60S ribosomal protein L13-210142e-109
Q9FF90 60S ribosomal protein L13-39802e-105
Q9SMT4 Putative 60S ribosomal protein L13-28834e-094

TrEMBL top hits (Blast detail)Scoree value
B9DGA4 60S ribosomal protein L1310224e-109
A1YMY6 60S ribosomal protein L1310153e-108
B9STE6 60S ribosomal protein L139661e-102
B9S1X7 60S ribosomal protein L139607e-102
B7FGS0 60S ribosomal protein L139543e-101

Arabidopsis top hits (Blast detail)Scoree value
AT3G49010.1 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome10232e-111
AT3G49010.2 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome10232e-111
AT3G49010.3 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome10232e-111
AT3G49010.4 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome10017e-109
AT5G23900.1 60S ribosomal protein L13 (RPL13D)9811e-106

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  10%
 
112  10%
 
123  15%
 
61  5%
 
712  60%

Unigene MembersMember information