RadishBase

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Information for unigene UN17804

FASTA Sequence

Unigene ID:UN17804

Length: 1382

TTTTATAATTTGCAAATCTTGAAAAAGAGTCTTATTTATTTAAATGACATGAGAAAACATTATACTACAAGAATTAATTATTACCC
CGTAAACAAAAGGAAAGACTTGTTGAACCAACCACAATACATATACATATATATATTAAAAGACATTAAATATGATAGATACTAAG
TATATCTTGTAAAGGGAAAAAACACGATTAAAGAGTCGAGAGTTAAACCTAATGAGGTCTTTTAGGTTCGACAACGAAATCCACAT
GACTTCAATTCTGCAGTAGTACTATCCGTGGAATTAGTTAAGCCCATTTGGCGATGATCGACATGCCACCGCACCCAAGAAGAGCT
GCAATGAAACACTTGATCTGCATTTTGATGCTACCTTGAAGCTTTGGTCCCATGAACTCTGCCGCAAGAAGGTCCACAAGCGCCAT
GTAGATGAGCAATCCTGCGGAGCATGCATTGAGCAATCCAACAGTTACCAATGCAGAGGGACTATTGTCTCTGTAGATGGTCGAAA
GAGCGATCCCTAAGGCTATTCCAAAAGGCGTTGTCACCGCAAAAAAGAACGCCATAAGAAACTTTTTCAAGTTCGTATACTCAGCC
TGGAGGATGCAACCACCAAGACCCATGCCTTCGAACATTTGATGGAAGCAAAGAGCTGCGATGAGTCCTTTAATGGTGCAAGTGTC
ACTTGTTGCTCCTAGAGATAGTCCAATGACTACAGAGTGAACTATGATTCCAAGTTCCAGTACCATAGCAATGACTCGATATCTCA
AGAGTTGTGCACTCGCGGAATCTCCATCTTTAGTGGGTAAGGTAACATCATTTCCAGGGCCGTGACCATGACCATGTGGTACGATT
CCAACTGCGTTCTTGCTAGTATAAATGCTCGTAGCCATGGAATCGATGACTAAAGTGATTAGACCGGACAACATAGCAAGAAACCC
GGAGAAAGGAAATTTGTGCCACGGGTTCTCTTCGAGGCATTGTGAAGACAACATCTCGAAAGAATCAGGCAAGACGTGCATAAAAC
CAGTTCCGAGGATAATCCCTGAGGCGAAACATTTAACGATCGTGAAAATGTTCCCGTCGGGTTGAAGGAATGGCACGGAATGGCTA
AAGAGAGGAGCACCAACACCAATCATGCTTGCGACTAGGATTGCTGCGATTGCTATGATTTTGAGAGGCAAAGCTTTAGCCTTGTT
GACGCATGGGTTCGCTGACTCGCTTGCGCAGTCTTGGGGCGCTGTTGAAGTTGCCGGAGAGATTGTATAAGAGAGAAAAATGAGTA
CGAGGAAGATTGTTTTCATGAGAAATGTTGAAGTTGAAGCCATTTTTGTTTTCTTCTGGAGTTTGTCTTTGGCTTGTTTAATGTCT
GTGTCC

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
ACR14982 iron-regulated transporter 1 [Arabidopsis halleri subsp. gemmifera]	1626	1e-178
XP_002869968 Fe(II) transport protein IRT1 [Arabidopsis lyrata subsp. lyrata]	1624	2e-178
CAE30485 Fe(II) transport protein IRT1 [Arabidopsis halleri subsp. halleri]	1619	7e-178
CAL25151 putative Fe(II) transporter 1 [Noccaea caerulescens]	1615	2e-177
CAL25150 putative Fe (II) transporter 1 [Noccaea caerulescens]	1607	2e-176

Swiss-Prot top hits (Blast detail)	Score	E value
Q38856 Fe(2+) transport protein 1	1578	2e-174
Q8S3W4 Probable zinc transporter 8	1284	2e-140
O81850 Fe(2+) transport protein 2	1260	1e-137
Q9SLG3 Zinc transporter 3	731	3e-076
Q9FIS2 Probable zinc transporter 12	678	4e-070

TrEMBL top hits (Blast detail)	Score	E value
D0Q1H1 Iron-regulated transporter 1	1626	8e-179
Q70IJ1 Fe(II) transport protein IRT1	1619	5e-178
Q0VJU0 Putative Fe(II) transporter 1	1615	1e-177
Q0VJU1 Putative Fe (II) transporter 1	1607	1e-176
Q93YA1 Putative Fe(II) transporter	1586	3e-174

Arabidopsis top hits (Blast detail)	Score	E value
AT4G19690.2 IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter	1600	4e-178
AT4G19680.2 IRT2; iron ion transmembrane transporter/ zinc ion transmembrane transporter	1261	9e-139
AT4G19690.1 IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter	866	6e-093
AT4G19680.1 IRT2; iron ion transmembrane transporter/ zinc ion transmembrane transporter	849	5e-091
AT5G45105.1 ZIP8 (ZINC TRANSPORTER 8 PRECURSOR); cation transmembrane transporter	847	9e-091

EST library breakdown for ESTs in the assembly


11	8			35%


10	5			22%


6	6			26%


12	3			13%


9	1			4%

Unigene Members