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Information for unigene UN17804

FASTA Sequence
Unigene ID: UN17804Length: 1382  SNP
TTTTATAATTTGCAAATCTTGAAAAAGAGTCTTATTTATTTAAATGACATGAGAAAACATTATACTACAAGAATTAATTATTACCC
CGTAAACAAAAGGAAAGACTTGTTGAACCAACCACAATACATATACATATATATATTAAAAGACATTAAATATGATAGATACTAAG
TATATCTTGTAAAGGGAAAAAACACGATTAAAGAGTCGAGAGTTAAACCTAATGAGGTCTTTTAGGTTCGACAACGAAATCCACAT
GACTTCAATTCTGCAGTAGTACTATCCGTGGAATTAGTTAAGCCCATTTGGCGATGATCGACATGCCACCGCACCCAAGAAGAGCT
GCAATGAAACACTTGATCTGCATTTTGATGCTACCTTGAAGCTTTGGTCCCATGAACTCTGCCGCAAGAAGGTCCACAAGCGCCAT
GTAGATGAGCAATCCTGCGGAGCATGCATTGAGCAATCCAACAGTTACCAATGCAGAGGGACTATTGTCTCTGTAGATGGTCGAAA
GAGCGATCCCTAAGGCTATTCCAAAAGGCGTTGTCACCGCAAAAAAGAACGCCATAAGAAACTTTTTCAAGTTCGTATACTCAGCC
TGGAGGATGCAACCACCAAGACCCATGCCTTCGAACATTTGATGGAAGCAAAGAGCTGCGATGAGTCCTTTAATGGTGCAAGTGTC
ACTTGTTGCTCCTAGAGATAGTCCAATGACTACAGAGTGAACTATGATTCCAAGTTCCAGTACCATAGCAATGACTCGATATCTCA
AGAGTTGTGCACTCGCGGAATCTCCATCTTTAGTGGGTAAGGTAACATCATTTCCAGGGCCGTGACCATGACCATGTGGTACGATT
CCAACTGCGTTCTTGCTAGTATAAATGCTCGTAGCCATGGAATCGATGACTAAAGTGATTAGACCGGACAACATAGCAAGAAACCC
GGAGAAAGGAAATTTGTGCCACGGGTTCTCTTCGAGGCATTGTGAAGACAACATCTCGAAAGAATCAGGCAAGACGTGCATAAAAC
CAGTTCCGAGGATAATCCCTGAGGCGAAACATTTAACGATCGTGAAAATGTTCCCGTCGGGTTGAAGGAATGGCACGGAATGGCTA
AAGAGAGGAGCACCAACACCAATCATGCTTGCGACTAGGATTGCTGCGATTGCTATGATTTTGAGAGGCAAAGCTTTAGCCTTGTT
GACGCATGGGTTCGCTGACTCGCTTGCGCAGTCTTGGGGCGCTGTTGAAGTTGCCGGAGAGATTGTATAAGAGAGAAAAATGAGTA
CGAGGAAGATTGTTTTCATGAGAAATGTTGAAGTTGAAGCCATTTTTGTTTTCTTCTGGAGTTTGTCTTTGGCTTGTTTAATGTCT
GTGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACR14982 iron-regulated transporter 1 [Arabidopsis halleri subsp. gemmifera]16261e-178
XP_002869968 Fe(II) transport protein IRT1 [Arabidopsis lyrata subsp. lyrata]16242e-178
CAE30485 Fe(II) transport protein IRT1 [Arabidopsis halleri subsp. halleri]16197e-178
CAL25151 putative Fe(II) transporter 1 [Noccaea caerulescens]16152e-177
CAL25150 putative Fe (II) transporter 1 [Noccaea caerulescens]16072e-176

Swiss-Prot top hits (Blast detail)Scoree value
Q38856 Fe(2+) transport protein 115782e-174
Q8S3W4 Probable zinc transporter 812842e-140
O81850 Fe(2+) transport protein 212601e-137
Q9SLG3 Zinc transporter 37313e-076
Q9FIS2 Probable zinc transporter 126784e-070

TrEMBL top hits (Blast detail)Scoree value
D0Q1H1 Iron-regulated transporter 116268e-179
Q70IJ1 Fe(II) transport protein IRT116195e-178
Q0VJU0 Putative Fe(II) transporter 116151e-177
Q0VJU1 Putative Fe (II) transporter 116071e-176
Q93YA1 Putative Fe(II) transporter15863e-174

Arabidopsis top hits (Blast detail)Scoree value
AT4G19690.2 IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter16004e-178
AT4G19680.2 IRT2; iron ion transmembrane transporter/ zinc ion transmembrane transporter12619e-139
AT4G19690.1 IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter8666e-093
AT4G19680.1 IRT2; iron ion transmembrane transporter/ zinc ion transmembrane transporter8495e-091
AT5G45105.1 ZIP8 (ZINC TRANSPORTER 8 PRECURSOR); cation transmembrane transporter8479e-091

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
118  35%
 
105  22%
 
66  26%
 
123  13%
 
91  4%

Unigene MembersMember information