Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN17838

FASTA Sequence
Unigene ID: UN17838Length: 1063  SNP
GGTGAAGAAAAAAAAACAATACAGCTCTCTTCTCTCCTCTTCTTCGTCACAAATTCTTCAAAAAAGAGACAATCATGGGTAAAGGT
CCAGGACTCTACACCGAGATCGGCAAAAAGGCCAGAGATCTTTTGTACAAGGACTACCAAGGAGACCAGAAGCTCAGTATCACCAC
TTACTCTTCAACCGGTGTTGCAATCACAACAACTGGAACAAACAAGGGAGATTTGTTTGTGGGTGATGTACTTACCCAAATCAAGA
ACAAGAACTTAACTGCTGATATCAAAGTTGCCTCTGATTCTTCTATCCTTACCACTGTCACCTATGATGAGGCTACCCCTGGATTG
AAGGCTATCCTTAGCGCCAAGGTGCCTGATCAGAAATCTGCCAAGGTTGAGCTCCAGTATCTGCATCCCCATGCAGGTATCTGCAC
CAGCGTTGGACTGACAGCTAGCCCCGTTGTCAACTTCTCCGGTGTGATTGGAACCAGTGTGTTGGCTCTTGGTACCGATGTGTCCT
TTGACACAGAATCTGGCAACTTCAAACATTTCAACGCCGGTGTGAGCTTCACCAAGGATGATTTGATTGCTTCTCTTACTCTGAAT
GACAAAGGTGAGAAATTGAATGCATCGTACTACCACATTGTGAACCCCTTGAAGAACACAGTGGTTGGAGCCGAGGTTAGCCACAG
CTTGAAGAGCCAAGTGAACACGATAACCGTGGGTGCTCAGCACGCTCTGGACCCATTGACCACGGTTAAGACACGCGTAAACAATG
CTGGTATAGCCAACGCTCTGATCCAACACGAGTGGCGTCCGAAGTCGTTCATCACCATCTCTGGAGAGGTTGACTCTAAGGCCATC
GAGAAGAGTGCTAAAGTTGGATTTGCTCTCGCTCTCAAGCCTTGAGTGAAAAGAACCTCCTCCAATGTCTTCCTAATCTTTTGGAA
CTAATCTCTGTCTGTTTTTTTTTTTCCTTTAAAAATTGTTCATTTGTTTTCTTTTTTTACAAAATAAGAAGAAAAATAAAATACTA
TGAAAGGATCGTCTTTGAAGATGAACCATAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAS21632 voltage-dependent anion-selective channel protein [Brassica rapa]13391e-145
AAS48868 voltage-dependent anion-selective channel [Brassica rapa subsp. pekinensis]13382e-145
ABB97031 unknown [Brassica rapa]12306e-133
XP_002873707 voltage-dependent anion-selective channel protein hsr2 [Arabidopsis lyrata subsp. lyrata]11562e-124
XP_002884286 hypothetical protein ARALYDRAFT_477400 [Arabidopsis lyrata subsp. lyrata]10631e-113

Swiss-Prot top hits (Blast detail)Scoree value
Q9SMX3 Mitochondrial outer membrane protein porin 211183e-121
Q9SRH5 Mitochondrial outer membrane protein porin 110539e-114
P42055 Mitochondrial outer membrane protein porin of 34 kDa10287e-111
P42056 Mitochondrial outer membrane protein porin of 36 kDa9865e-106
P42054 Outer plastidial membrane protein porin9857e-106

TrEMBL top hits (Blast detail)Scoree value
Q6S739 Voltage-dependent anion-selective channel protein13391e-145
Q6QTH2 Voltage-dependent anion-selective channel13381e-145
Q2V610 Putative uncharacterized protein12304e-133
B9S2B6 Voltage-dependent anion-selective channel, putative10567e-113
P93252 Porin10522e-112

Arabidopsis top hits (Blast detail)Scoree value
AT5G15090.1 VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3); voltage-gated anion channel11192e-122
AT3G01280.1 VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1); voltage-gated anion channel10546e-115
AT5G67500.1 VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2); voltage-gated anion channel6981e-073
AT5G57490.1 VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4); voltage-gated anion channel6631e-069
AT3G49920.1 VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5); voltage-gated anion channel2822e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
93  33%
 
112  22%
 
82  22%
 
62  22%

Unigene MembersMember information