RadishBase

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Information for unigene UN17839

FASTA Sequence

Unigene ID: UN17839	Length: 877	SSR
GGAGGGTTTTGGAAGAAGAAGAAGAAGAGCAAGCGTCTCTACCTTTCGATTTTTCGCTCATCTAGATTCACTCTCTAAAGCGGGAG GCGATGGCTTCTTTGTTCAAGGAGCAAGCAAAGCTCTCGGCTTATCGAGACAGAAGGTTCTCAGGCACACAGGAGGAGTTCGAGGA GGCGTTAAGGACCTCTTCCACCGTTTACATTGGTAACGTCTCTTTCTACACAACGGAAGAGCAGATTTACGAGCTTTTCTCCAGGG CAGGAGAGATTAAAAAGATTATCATGGGACTCGACAAGAACACCAAAACCCCCTGTGGTTTCTGTTTCGTCCTGTTCTACTCGAGA GAGGACACAGAGGATGCAGTCAAGTATATAAGTGTCACCATTCTTGATGACCGCCCTATTCGTGTTGATTTTGATTGGGGCTTCCA AGAAGGAAGGCAATGGGGACGTGGTAGAAGCGGTGGCCAGGTTCGAGATGAATACCGTACAGATTATGATCCTGCTAGAGGTGGTT ATGGAAAATTAGTTCAGAAGGAACTCGAAGCACAGAGACAGCTCGTAGATTACGGTACTGGTTCACTTGGAGGATCCTACCCTGCA CCCGCCCCATCCAATTATGAAAGGCGTGGTGGACCTCTTGGTGGGGGAGGATATGGCCAAGGAGGATCAAATCGCCATGGAAGAGG TGGAGATTTTCATCGGAAGCGTCAAAGGGATGATGATCGTCATGGACGCGACAACACAAGAAGAAACTCAGATCATGAGACTAGGA GAGACTCTGATCATGACATGAGACCGGAAAGACCCACGATTCCGTGAGAGCGGTGACTCGGACGATGACGTGAAGATGATCGGAGA GTCTTAAATGAAGTTAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002863606 cap-binding protein 20 [Arabidopsis lyrata subsp. lyrata]	1126	5e-121
NP_199233 nuclear cap-binding protein subunit 2 [Arabidopsis thaliana]	1115	1e-119
ACN43578 nuclear cap-binding protein [Nicotiana tabacum]	965	2e-102
ACL54980 nuclear cap-binding protein CBP20 [Solanum tuberosum]	956	3e-101
ACL54982 nuclear cap-binding protein CBP20 [Solanum tuberosum]	954	5e-101

Swiss-Prot top hits (Blast detail)	Score	e value
Q9XFD1 Nuclear cap-binding protein subunit 2	1115	4e-121
Q84L14 Nuclear cap-binding protein subunit 2	806	3e-085
Q54KR9 Nuclear cap-binding protein subunit 2	524	2e-052
Q9CQ49 Nuclear cap-binding protein subunit 2	524	2e-052
B1WC40 Nuclear cap-binding protein subunit 2	524	2e-052

TrEMBL top hits (Blast detail)	Score	e value
C0L7C4 Cap binding protein 20	965	2e-102
B8YFW2 CBP20 protein	956	2e-101
B8YFW4 Nuclear cap-binding protein	954	3e-101
C0L7C6 Nuclear cap-binding protein	954	3e-101
C0L7C7 Nuclear cap-binding protein	940	1e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT5G44200.1 CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding	1115	4e-122
AT5G44200.2 CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding	1115	4e-122
AT3G10400.1 RNA recognition motif (RRM)-containing protein	131	5e-008
AT2G18510.1 emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding	120	1e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information