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Information for unigene UN17854
| FASTA Sequence |
| Unigene ID:UN17854 |
Length: 1145 |
GAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGCCTCGATCGACAACGACGACGACGAGCAACGCTCTAGCT
CCTCCGTAGAACCAAATTCCGTCGTAGATCTTATCAGGATGAGTAACGATCTTCTCGACATCGATCCTATCGACCTTCAATTCCCT
TTTGAATTGAAGAAGCAGATCTCTTCGTCTCTCTATCTGGCTAACAAAACCGACAATTATGTCGCCTTCAAGGTTAAAACGACGAA
TCCGAAGAAGTATTGTGTTAGGCCTAACACTGGTGTTGTTCTTCCGAGATCCTCTTCTGAAGTTCTAGTGACGATGCAAGCGCAAA
AGGAAGCTCCTGCTGATATGCAGTGCAAGGACAAGTTCTTGCTTCAGTGTGTTATCGCCAGTCCCGGAGCCACTGCCAAGGAAGTT
ACTCCTGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAGGAGACTAAATTGAGAGTTGTCTATGTTGATCCACCACGGCCACC
ATCACCCGTTCGTGAAGGATCGGAAGAGGGCTCTTCTCCTAGAGCTTCTGTCTCTGACAGTGCCAACGTTTCTGATTTTACTGCTG
CTCCAAGATTTAGCGTGGACAGGCTTGAACCTCAGGAAAACTCATCTGAGGCGAGAGCTCTCGTCGCAAGGCTCACCGAGGAAAAG
AACTCTGCGCTTCAACTGAACAAGAAACTTCAACAAGAATTGGAGCAGTTGAAGCGTGAAAGCAAGAGGAGTCAGAGTGGTGGTGG
AATCCCGTTCATGTACGTTCTTCTGGTGGGATTAATCGGTCTAATCTTGGGATACATCATGAAGAGGACATGATCACGTTGAATTG
ATAAAACAAACCCACCCCCACAAAGTCTCAAAAGTAGCTCGGACAAACCAAAAAGACATGAAAAAAAAGAAAAATCAAATTGTGTC
GGAAAGGACATTCAGTCTTCTCTCTTGTCTTGTCGTCGTCAGTTCACCTTTGGTTGAATCTTGAACTCTAGTTGCATTAGAGAATT
GTTAATTACGGTTTATCATAAGACTTAGAATTTCCATCCTTTTGTAATCAAGAAGACATTTTTTCAGTGTGTTCGTTCTCTCTCCT
CCATTAACTTCTTCTAATCTTTGTTTT |
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| GenBank top hits (Blast detail) |
Score | E value |
|---|
| XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata] | 1079 | 2e-115 | | NP_182039 VAP-like protein 12 [Arabidopsis thaliana] | 1067 | 6e-114 | | NP_567101 vesicle associated protein [Arabidopsis thaliana] | 965 | 4e-102 | | AAM63134 putative VAMP-associated protein [Arabidopsis thaliana] | 949 | 3e-100 | | XP_002511657 vesicle-associated membrane protein, putative [Ricinus communis] | 879 | 4e-092 |
| Swiss-Prot top hits (Blast detail) |
Score | E value |
|---|
| O60119 Vesicle-associated membrane protein-associated protein C16G5.05c | 200 | 8e-015 | | Q9P0L0 Vesicle-associated membrane protein-associated protein A | 183 | 8e-013 | | Q5R601 Vesicle-associated membrane protein-associated protein A | 183 | 8e-013 | | Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein | 183 | 8e-013 | | Q9Z270 Vesicle-associated membrane protein-associated protein A | 178 | 3e-012 |
| TrEMBL top hits (Blast detail) |
Score | E value |
|---|
| Q9SHC8 At2g45140 | 1067 | 4e-114 | | Q8VZ95 At3g60600 | 965 | 3e-102 | | Q8LDM1 Putative VAMP-associated protein | 949 | 2e-100 | | B9RD68 Vesicle-associated membrane protein, putative | 879 | 2e-092 | | B9GPC4 Predicted protein | 866 | 8e-091 |
| Arabidopsis top hits (Blast detail) |
Score | E value |
|---|
| AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule | 1073 | 4e-117 | | AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 971 | 3e-105 | | AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 717 | 8e-076 | | AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 702 | 5e-074 | | AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein | 657 | 8e-069 |
| EST library breakdown for ESTs in the assembly |
| Unigene Members |
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