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Information for unigene UN17964

FASTA Sequence
Unigene ID: UN17964Length: 819 SSR 
AAAACAAAATCTAGAAATTGTATTAAATAGTTGGAACTAAAACAAAATTTGAAAGAAAAGCAAGCAGCAACCCAAACAAAAGTAAC
TCAACATTCCACTACTCATGGAGACACTTTCTTATTCTTGATTGTCTTCACTCCTCTACGTGGGTTCGGTTTCACTTTCTTCTTCG
TCTTCCTACTCGGAGACTCCCTCACTGGACCAGCCGGGATTCCTTTCTTCAGAGCACTTCCTCTTGGTGTAGCAGACGGAGGCAAC
CTCAAGTCTTGTGGAGGTAGAGGGCAATGAGGCTTCCACACCAAATTGTTCTTCATCGCAAATCTTACTCTCTTTGAGCTCTTCTC
ACTGCTCGGGCCAGGTAAGCTCTTCTCTGCTGCATCTCTGTTAACAGTAGCACCTTGCTCCACAACCTCTTTGTTCTCTCTTTTCC
TCTTCTTGTTCTTCTTTATGGCTACTGGAACAGGTTCTGCTTCTTCACAGACACTTGCAACCTCATCTTTCAGTGGTCCCATCTCG
GATGCAATCTTCTCAAACTCCTCCCGAAGATCTGATATCATAGTCTCGTCAACAGACTCATCTTTCTCACCATGACTGACAACAAC
ATCAGCTCCCTTCTTCTTAGAACTTGAACACTTCTTCAAACTCTTCTTCTTCTTCTTCTTCGAAGAAGACCCATTGGCAACAACCT
CCTTAGACTCAGAAACAACTGCCTCAACAGCCATAGGAACCAGCTCAGGCACTTCATCCTTCTCCCGAGAAGCTTCAGTGATGGAA
ACCACAACACCAGAGCTCAACATATCCTTCTCCAACTGCAAAACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197560 uncharacterized protein [Arabidopsis thaliana]8003e-083
XP_002874005 hypothetical protein ARALYDRAFT_910101 [Arabidopsis lyrata subsp. lyrata]7682e-079
XP_002267225 PREDICTED: hypothetical protein [Vitis vinifera]4123e-038
XP_002318342 predicted protein [Populus trichocarpa]3542e-031
CAH67793 OSIGBa0132E09-OSIGBa0108L24.7 [Oryza sativa Indica Group]3488e-031

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8RY12 AT5g20600/F7C8_1908047e-084
B9I4Z2 Predicted protein3541e-031
A2XYH9 Putative uncharacterized protein3485e-031
Q01HZ2 OSIGBa0132E09-OSIGBa0108L24.7 protein3485e-031
Q0J9E4 Os04g0658600 protein (Fragment)3442e-030

Arabidopsis top hits (Blast detail)Scoree value
AT5G20600.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 444 Blast hits to 431 proteins in 151 species: Archae - 0; Bacteria - 10; Metazoa - 196; Fungi - 114; Plants - 27; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).8143e-087

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information