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Information for unigene UN18078
| FASTA Sequence |
| Unigene ID: UN18078 | Length: 1659 |
SSR | | GGAACGAGAGAGAGAGAGAGAGAGAGATGCTGCTTCAGGCGGTACAGAATCGCAATGTTCCGCTGGCTTCCTCCTCCGCCTCATAT
GCTCGCCTCCCTCGCCCGAAATTACCACCCGTCGTAGTCTCCGTTGCTCCAATGAAGAAGACGGCGGCAATAATCGTGTGCTCCAT
CTCCCAGGTGTATGGCTACGGAACGGTGGACTACGAGAGAAGGCCGATTATCCAGTGGAATGCAATCTACAAGAAGATATCTCTGA
TGGAGAAGCCGGAGCTGGGTGCGGCCTCCGTCTTGAATCAGTGGGAGAAAGGAGGCCGTAAGCTTACCAAGTGGGAGCTCTGTCGG
GTCGTCAAGGAGCTTCGCAAGTATAAGCGTCCTAACCAAGCTCTTGAGGTGTACGACTGGATGAACCAGCGAGGCGAAAGGTTTCG
GTTGTCTGCAAGTGATGCTGCCATCCAGCTCGACCTCATCGGCAAAGTCCGTGGTATTTCAGACGCCGAAGACTTCTTCCTCACTC
TCCCTGACAACTTTAAGGACCGCAGAGTCTATGGCTCCCTCCTCAATGCCTATGTTCGGGCCAAGTCCAGAGACAAAGCTGAAGCC
TTGATCGACACTATGAGGCAGAAAGGTTACGCCCTTCACCCTCTTCCCTTCAACGTTATGATGGCTCTCTACATGAACCTTAGGGA
GTACGACAAAGTTGACGCTATGGTCTTCGAGATGAAGCAGAAAGATATTCGTCTCGACATCCACTCCTACAACATCTGGCTCTCCT
CCTGCTCCTCCGTTGACCAAATGGAGCTTGTCTATCACCAGATGAAATCTGATGTTTCCATCAATCCCAACTGGACCACTTTTAGC
ACCATGTACATTAAGATGGGCGAATCCCAGAAAGCTGAGGATGCTCTGAGGAAGGTTGAGGCCAGGATTACTGGTCGTAATCGTAT
CCCTTATCACTACCTCTTGAGCTTGTACGGCAGCCTTGGTAACGTGAAAGAGCTGTTCCGGGTTTGGAATGTCTACAAATCTGTTG
TACCCAGCATTCCCAATTTGGGATACCATGCTCTCGTCTCCTCCTTGGTGAGGATGGGAGATATTGAAGGTGCCGAGAAGTATATG
AGGAGTGGCTTCCTGTCAAGTCTTCTTTGACCCCAGGATACTAACCTTCTTATGATGTGTACGTTAAAACGACCAGCTTGACAAGG
CTGAAGGGTTGTTCGACCACATGATTGAAATGGGGGGAAAGCCGAGCCCAGGTACTTGGGAGATTCTAGCCGATGGTCATACCAGA
AAGAGGAGTATCACACAGGCTTTGGCTTGTCTGAAACAAGCTTTTTTTGCGCAAGGGTCCAGCAATTTGAGGCCCAAGGTGTTGGT
GCTCTCAGGCTTCTTCAAGCTCTGTGAAGAGGAGTCGGATGTTGCTAGTAAAGAGACCGTTTTGGAATTGTTGAGGCAATCGGGGC
ACCTTCAAGACAAATCTTACCAAGCTCTTATTGATGCAGCAGAAGAAAATGATGAGACTGATGTACTTGTTACGCAACTGCAAGAT
GATTTGTAATAAGAGTAAGATAGATTTAGATCTGGCTGTAAAAGAGGAACCTGAATCAAAATGATCCCCCCTAAATTACAGTTAGT
ACTAAAACATGAATGATTTGCGCAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892022 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 1642 | 2e-180 |
| NP_171717 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 1620 | 7e-178 |
| AAM19786 At1g02150/T7I23.8 [Arabidopsis thaliana] | 1618 | 1e-177 |
| XP_002327026 predicted protein [Populus trichocarpa] | 1310 | 6e-142 |
| XP_002301239 predicted protein [Populus trichocarpa] | 1295 | 3e-140 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LPS6 Pentatricopeptide repeat-containing protein At1g02150 | 1620 | 3e-179 |
| Q9FZ24 Pentatricopeptide repeat-containing protein At1g02370, mitochondrial | 508 | 3e-050 |
| Q93WC5 Pentatricopeptide repeat-containing protein At4g01990, mitochondrial | 500 | 2e-049 |
| O22714 Pentatricopeptide repeat-containing protein At1g60770 | 486 | 9e-048 |
| Q9SY07 Pentatricopeptide repeat-containing protein At4g02820, mitochondrial | 465 | 3e-045 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9MV62 Predicted protein | 1310 | 4e-142 |
| B9GP78 Predicted protein (Fragment) | 1295 | 2e-140 |
| B9SKK8 Pentatricopeptide repeat-containing protein, putative | 1284 | 4e-139 |
| A5C6T5 Putative uncharacterized protein | 920 | 7e-097 |
| A2XW27 Putative uncharacterized protein | 856 | 2e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02150.1 pentatricopeptide (PPR) repeat-containing protein | 1620 | 3e-180 |
| AT1G02370.1 pentatricopeptide (PPR) repeat-containing protein | 508 | 2e-051 |
| AT4G01990.1 pentatricopeptide (PPR) repeat-containing protein | 500 | 2e-050 |
| AT1G60770.1 pentatricopeptide (PPR) repeat-containing protein | 486 | 8e-049 |
| AT4G02820.1 pentatricopeptide (PPR) repeat-containing protein | 465 | 2e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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