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Information for unigene UN18096
| FASTA Sequence |
| Unigene ID: UN18096 | Length: 1451 |
SSR | | GGAAAATCAAAACTTTTCTCAAGGAAACAAACAAAAATCTTTCTCTTTTTTGTTGCAGTGGAAAGAAAGAAAAAAGATGCAGAATC
CGAGGTTTAGGCAACAACAACAACAACAAGCTATGATGCAGCAACAGCAAGCTTTGATGCAACAACACTCTCTTTACCATCCTGGT
GTCTTGGCCCCTCATCAGTTAGAGCCTGTTCCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGCACTTGCCGTAGCGTGTATGT
TGGAAATATCCATATACAGGTCACCGAGCCTCTTCTTCAAGAGATTTTTACTAGCACCGGTCCTGTTGAAAGCAGTAAACTCATCA
GAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGACCGAAGATCTGCTGCTCTAGCTATACTTTCTCTCAACGGAAGACAT
CTGTTTGGACAGCCTATCAAAGTCAACTGGGCTTATGCCACTGGCCAGAGGGAAGATACATCCAGTCACTTTAACATTTTTGTTGG
AGACCTCAGTCCAGAGGTTACTGACGCTGCATTATATCAAATCTTTTCTGTTTTTTCCACTTGTTCGGATGCAAGAGTTATGTGGG
ATCAAAAAACTGGGCGCTCAAGAGGCTTTGGGTTTGTTTCCTTCCGCAATCAACAGGATGCTCAAACTGCTATAAACGAGATGAAT
GGTAAGTGGCTAAGTAGCAGACAGATAAGATGCAACTGGGCTACAAAAGGTGCTACTTCCGGTGAGGACAAGCTCAGCTCTGATGG
AAAAAGTGTTGTGGAACTTACAACCGGCTCATCAGAGGATGGTAAAGAGCCCTTAGATGAGGATGCTCCTGAGAACAACTCTCAGT
TTACCACTGTCTATGTGGGAAACCTCGCCCCTGAGGTGACTCAGCTAGATCTACACCGCTACTTCCACGCTCTTGGTGCTGGAGTT
ATTGAAGAGGTCCGGGTCCAACGAGACAAAGGCTTTGGTTTTGTGAGATATAACACGCACCCCGAGGCTGCTCTTGCTATTCAGAT
GGGCAACTTTCAACCTTACCTCTTTAACAGACAGATTAAGTGTTCATGGGGCAGCAAACCAACTCCACCAGGAACAGCATCAAACC
CACTTCCTCCACCTGCCCCAGCACCAGTGTTTGGTCTTTCCGCAGCTGATTTTTTAGCGTATGAGAGACAATTGGCACTGAGCAAG
ATGGCTTTAATGCACCCCCAGGGTCAGCACCCGCTAAGGCAGGCAGCTCATGGAATCAATGGAGCTGGAGCCACTGCAGCAATGTA
TGACGGTGGCTTTCAGAATGTAGCTGCAGCACAGCAGCTAATGTATTATCATTAATAAAACTCAAGACCCTGGTCCCAGTATCGTT
TTTCTTTTTTTATCTTGTTTGTTTGTGTGTGTCTGTCTGTCTGTCTTATCTAACTTGCTTTATTTTATATAAAGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002882868 hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp. lyrata] | 2081 | 2e-231 |
| AAM65229 oligouridylate binding protein, putative [Arabidopsis thaliana] | 2064 | 2e-229 |
| NP_188026 RNA recognition motif-containing protein [Arabidopsis thaliana] | 2056 | 2e-228 |
| XP_002529199 nucleolysin tia-1, putative [Ricinus communis] | 1822 | 2e-201 |
| NP_175810 oligouridylate-binding protein 1A [Arabidopsis thaliana] | 1813 | 2e-200 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q01085 Nucleolysin TIAR | 427 | 5e-041 |
| P70318 Nucleolysin TIAR | 356 | 9e-033 |
| P32588 Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | 338 | 1e-030 |
| P31483 Nucleolysin TIA-1 isoform p40 | 252 | 1e-020 |
| P52912 Nucleolysin TIA-1 | 252 | 1e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAP3 Oligouridylate binding protein, putative | 2064 | 1e-229 |
| Q9LJH8 AT3g14100/MAG2_5 | 2056 | 1e-228 |
| B9ST80 Nucleolysin tia-1, putative | 1822 | 2e-201 |
| Q9SYG4 At1g54080/F15I1_16 | 1813 | 2e-200 |
| Q3ECQ4 Putative uncharacterized protein At1g54080.2 | 1793 | 4e-198 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G14100.1 oligouridylate-binding protein, putative | 2057 | 5e-231 |
| AT1G54080.1 oligouridylate-binding protein, putative | 1821 | 1e-203 |
| AT1G54080.2 oligouridylate-binding protein, putative | 1806 | 6e-202 |
| AT1G17370.1 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 1776 | 2e-198 |
| AT1G17370.2 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 1753 | 8e-196 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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