RadishBase

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Information for unigene UN18106

FASTA Sequence

Unigene ID: UN18106	Length: 1062		SNP
GGATCCATGAAAAATCTCTGTGATTCAGAATTTAAACCCTATTTAAAGTAACAAATACTTGATGCTTTTCTTCTGTGATCAAATCA ATTGTTTCAGAAAATGGAGTTCGAAAACCGGTACGGGCTTTCAGCGACGCAGAAGTACGACTGTCTCTTGTTCGATTTGGACGACA CTCTTTATCCTCTTAGCACCGGACTCGCCAGAGAATGTGGGAAGAACATCAAAGATTATATGGTCGAGAAACTAGGTATACCGAAG GACAAAATCGTTGAATTGTCTAATCTTCTCTACAAGAACTATGGAACAACAATGGCCGGTCTTAGAGCGATCGGATATGACTTTGA CTACGACGAATATCACGCTTTCGTCCACGGTCGTTTACCGTACGATAACATAAAACCTGACCCTGTTCTCCGAAGCATCTTGCTTA GCCTTCCTCTCCGCAAAGTCATATTTACCAACGCGGATAGAGTTCACGCGGCCAAGGCGTTGAAGAAGTTGGGATTAGAGGATTGT TTCGAAGGGATCATATGTTTCGAAACGCTTAACCCGACTCACACAAACGCTGCTTCTGAAAATTCTGAGATTTTTGATATCGTTGG ATATTTCGACCGGTCTGAACCGGTCGGTTCACTCCCTAAAACGCCTATTGTGTGTAAACCGTCTGAATCCGCTATTGAGAAAGCCC TCGAAATCGCCAATATTGATCCTAACCGAACGCTGTTCTTTGAGGACAGTGTTCGAAATGTACAAGCTGGAAAGCGCGTTGGTCTT CACACGGTTCTGGTTGGTTCACCAAACAAAGTCAAAGGAGCAGATTGCGCCTTGGAAAACATTCACAACATGAAGGAGGCATTACC AGAGTTATGGGAGTCCGACAGAAAATCATCGGATGTTGGATATTCCGGCAAGGTCGCCGTTGAGACGTCTGTTAGAGCTTAGAATT GTTTTACCGTTGTACCTACTTTTCCTCCATTGTCTTTTTCAACTTTTTTCAAATGACCTATGTCATTTTTGTTTTCCGAGTTGTGT TTATAAGTTCAAATAAAAATCCCTAAATTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_195843 haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	1342	7e-146
AAM65114 unknown [Arabidopsis thaliana]	1338	2e-145
XP_002870962 hypothetical protein ARALYDRAFT_908087 [Arabidopsis lyrata subsp. lyrata]	1334	6e-145
CBI30538 unnamed protein product [Vitis vinifera]	1106	2e-118
NP_001150070 catalytic/ hydrolase [Zea mays]	1011	2e-107

Swiss-Prot top hits (Blast detail)	Score	e value
Q09893 Uncharacterized protein C24B11.05	210	5e-016
P53078 Protein SSM1	122	8e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9LZK9 At5g02230	1342	5e-146
Q8LAW1 Putative uncharacterized protein	1338	1e-145
B6TKR3 Catalytic/ hydrolase	1011	1e-107
B4G0I2 Putative uncharacterized protein	1004	7e-107
B6TBN7 Catalytic/ hydrolase	997	5e-106

Arabidopsis top hits (Blast detail)	Score	e value
AT5G02230.1 haloacid dehalogenase-like hydrolase family protein	1343	2e-148
AT5G02230.2 haloacid dehalogenase-like hydrolase family protein	1343	2e-148
AT5G59480.1 haloacid dehalogenase-like hydrolase family protein	897	1e-096
AT5G59480.2 haloacid dehalogenase-like hydrolase family protein	882	6e-095
AT5G59490.1 haloacid dehalogenase-like hydrolase family protein	553	8e-057

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			25%


8	2			25%


6	2			25%


11	2			25%

Unigene Members	Member information