 |
Information for unigene UN18120
| FASTA Sequence |
| Unigene ID: UN18120 | Length: 1389 |
| SNP | GGAACTTAGAAAAATCTGTTTTCTTTCAGCTTAAAGGACAAACCTTTTTTGATCCTATCTCTCACACGAAGTGGTTGAGACTAGGC
CTAGTTGAGACTGTTGCCATAAATAAACAAAAGCTCTCTCTTTCTTTCTTTCTGATTGATTGATTGTTTGGTGGGTTCGACGAAAG
CTTTGATCTTTTGCATAAAATGGCGTCTCTTTTAAGCAGATTCTGTCGGAAAGTGGCTGTTCCGGGCTCAGCTCACGGAGCACGGA
TGGTTTCTACGACGACGTCGTGTGGATCAGAAACCGTGAAGTCGTTGAACCTGTACTCTGCTATTAACCAAGCTCTTCACATCGCC
TTGGAAACCGATCCTCGGTCTTATGTATTTGGGGAAGATGTTGGGTTTGGTGGAGTCTTCCGCTGCACAACAGGATTAGCTGAACG
GTTCGGGAAAAACCGTGTCTTCAACACTCCTCTTTGTGAACAAGGCATTGTTGGATTTGGTATTGGTCTAGCAGCAATGGGGAATC
GAGCAGTTGTAGAAATTCAATTTGCAGACTATATTTATCCTGCTTTTGATCAGATTGTTAATGAAGCTGCAAAGTTCAGATACCGA
AGTGGTAACCAGTTCAACTGTGGAGGACTTACAATAAGAGCACCGTATGGGGCGGTTGGTCATGGTGGACATTACCATTCACAATC
CCCTGAGGCTTTCTTCTGCCATGTCCCTGGCATTAAGGTTGTTATCCCTCGGAGTCCACGAGAAGCTAAGGGACTGCTCTTGTCCT
CTATCCGTGATCCTAATCCTGTTGTCTTCTTCGAACCAAAGTGGCTATATCGTCAAGCGGTAGAAGAAGTCCCAGAGCATGACTAT
ATGATACCTTTATCAGAAGCTGAGGTTATTAGACAAGGCAATGACATAACACTTGTTGGATGGGGAGTTCAGCTTACCGTTATGGA
ACAAGCTTGTCTAGACGCGGAGAAGGAAGGAATATCATGTGAACTGATAGATCTCAAGACTCTACTACCTTGGGACAAAGAAACAG
TGGAGGCCTCTGTTAAAAAGACTGGCAGGCTTCTTATAAGCCATGAAGCTCCTGTGACAGGAGGTTTTGGAGCAGAGATCTCTGCA
ACAATCCTCGAACGTTGCTTCTTGAAGTTAGAAGCGCCAGTAAGCAGAGTTTGTGGTCTGGACACTCCATTCCCTCTTGTGTTTGA
GCCGTTCTACATGCCCACCAAGAACAAGATATTGGATGCAATCAAGTCCACTGTCAATTACTAGCCATCCATTATGTTTCTTTGGA
AAACTTGAAGAATTATTGTTTGTTATGTATTATGTAGCTATTTATGCGGTACTGTTGTGTTTATATGACAAACTGATAAGCAACGA
ATTGCCTAAACCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175947 branched-chain alpha-keto acid decarboxylase E1 beta subunit [Arabidopsis thaliana] | 1736 | 2e-191 |
| AAC64005 branched-chain alpha-keto acid decarboxylase E1 beta subunit [Arabidopsis thaliana] | 1735 | 3e-191 |
| XP_002891838 BCDH BETA1 [Arabidopsis lyrata subsp. lyrata] | 1725 | 4e-190 |
| NP_187954 2-oxoisovalerate dehydrogenase E1 component, beta subunit [Arabidopsis thaliana] | 1687 | 1e-185 |
| XP_002884967 hypothetical protein ARALYDRAFT_478729 [Arabidopsis lyrata subsp. lyrata] | 1672 | 5e-184 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55FN7 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1188 | 3e-129 |
| P21839 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1182 | 1e-128 |
| Q6P3A8 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1182 | 1e-128 |
| P35738 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1182 | 1e-128 |
| P21953 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1175 | 9e-128 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SAV3 At1g55510 | 1736 | 1e-191 |
| O82450 Branched-chain alpha-keto acid decarboxylase E1 beta subunit | 1735 | 2e-191 |
| Q9LDY2 At3g13450 | 1687 | 7e-186 |
| C6TGA9 Putative uncharacterized protein | 1601 | 6e-176 |
| B9SBN1 2-oxoisovalerate dehydrogenase, putative | 1598 | 1e-175 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55510.1 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic | 1755 | 5e-196 |
| AT3G13450.1 DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic | 1688 | 3e-188 |
| AT5G50850.1 MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) | 560 | 2e-057 |
| AT1G30120.1 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) | 524 | 3e-053 |
| AT2G34590.1 transketolase family protein | 516 | 2e-052 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
