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Information for unigene UN18158
| FASTA Sequence |
| Unigene ID: UN18158 | Length: 1869 |
SSR | | GCTTAGGCAGAGCCACGTCTTGGGTGGCTTCACCCAAGCTGAAACGATCCTGCTCCACTCTCAGCAAGTTCAACGGTGCTGATCAT
CCTCGTCCTCTCCACGACCCGAGAGATAGCTTTGAGACCAAGTCTGTTAGGTCACACAGAAGTGCAGATAGAGTGATGCTCAAGAA
ACATTCATCGATGCAGATACTTCCTTCGGGCAGCAGGAGGCTATGGTGGAAACTCTTCCTCTGGAGCCATAGGAACCTTCACAAAC
ACCTCGTCTCCCTAAAGCCACATTCGGACAAGAATCACCAGTCTGGTTACACCTCTGACCTCGCTAGCCATCAAGAATCTGCAAAC
AACAATCACCAATGGTCTCGTCATAAGAATCAGTGGGTAGCGTTCTCTGCGGAGTCCTCTTCCATGAAACGAGTGGATGAGTGGGT
AAGAGGACTCGATGTCGAGACCGTGATTCCACTAAACGAGGATGAGGACAAGCACGGCTTCTTAGCTTCTCCTAAGATGGTGAGAA
ATGTAAATGAGTCAGAGGCCGTAGTGCATGCGAATAGCTTAATCCAGTCCCTTAGCAAATCCTCGAGCATGGCTCACATCTCGAGC
ATAGGCTTGAAAGCTGTCCCGAGCATCTCACACTTCACCAGCCTCAAGTCTATTGATTTATCCAACAACTTCATAGTTCAAATCAC
TCCTGCATCGCTTCCAAAGGGTCTTCATGCGTTGAACCTGTCCAAGAACAAGATCAGTGTGATCGAAGGACTGAGAGAACTGACAC
GTTTAAGAGTGCTTGATCTCAGTTACAACCGTATTTCTCGCATTGGACAAGGTTTATCAAACTGTACACTGATCAAAGAACTATAC
CTAGCTGGGAACAAGATCAGCAACGTAGAAGGCTTACACAGACTGCTCAAACTCATCGTTCTTGATCTTAGCTTCAACAAGATCGC
AACAACCAAAGCAATAGGCCAGCTAGTTGCCAACTACAACTCTCTCGTCGCTTTGAACATCCTCGGAAACCCGATTCAGAGCAATG
TAGGCGAGGACCAGCTGCGCAAGACTGTTTCCAGCCTGCTCCCTAAGCTAGTTTATCTCAACAAGCAGCTCATCAAGCCACAGAGA
GCCAGGGAAGTGCTCAAAGACAGCATCGCGAAAGCTGCTTTTGGTGGTGGAGGAGACACTTTTCACCACAGACGCAAGAGAACATC
CACCAAGAGAGTTGTGGGATCACCTTCCTCTAGCGTCCATCACAGAGGACACAACGGAGATGATAAACATAAAGGAAAGGGACGTG
GCTCTAAAAGTAGAAGCCAACATCAGCTGAAGAAAACTTCAACATAAGCCCTTTTTTTAAACAGAATGGTTCCAAGAATGTGTATG
AAACATTTGGTATTGAAAATGAAATACATTTTATTTTTTAAACATCTTTACAAATGTTTGGATCATATTTATTTTCACTGTATATA
ATAAAAAATCTAAAATTCTGTAAAATGGGGAACTCATGAAACTTTTTCACCGGTGGTCTTACGTCCCCTGGCTTCTTTCTCCTTTC
TTCTTCTTCTTCTTCTTCTTCTTCCCCGTATAGTCAACACAAGTTCACTAATTATGTCTGTCCCTTGTTGTTGTTTTTTTAGATTG
ATAGTCTCTTGGTGAAAGGTTTTTGGCAAATGAGGAGTCTATGTTCACTGCTGCTTTCAACCTCTATGACTCTAGCTTCCCGCTTC
AACTGCGTTGTCAAAGCTCTTGCAGCTTCCACCAGCTGTGCTGTGTCACGTATTATCACCCATCCCTCTGGACGAAGTAATCTATC
AATCTCTGTGAATATGTTCAGAAGCGAGCATGAGCTCCGGTGCTGACTTGTCCGGAAAGACAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_177947 Outer arm dynein light chain 1 protein [Arabidopsis thaliana] | 1361 | 9e-148 |
| AAF71805 F3F9.22 [Arabidopsis thaliana] | 1361 | 9e-148 |
| AAG52107 unknown protein; 65290-67280 [Arabidopsis thaliana] | 1361 | 9e-148 |
| XP_002887730 hypothetical protein ARALYDRAFT_476991 [Arabidopsis lyrata subsp. lyrata] | 1358 | 2e-147 |
| XP_002513932 protein binding protein, putative [Ricinus communis] | 909 | 2e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C9Q8 Probable pectin methyltransferase QUA2 | 312 | 2e-027 |
| Q3EC77 Probable methyltransferase PMT5 | 209 | 1e-015 |
| Q8GYW9 Probable methyltransferase PMT4 | 200 | 2e-014 |
| Q54Q39 Protein phosphatase 1 regulatory subunit pprA | 176 | 1e-011 |
| Q15435 Protein phosphatase 1 regulatory subunit 7 | 160 | 7e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C9Q9 Putative uncharacterized protein At1g78230 | 1361 | 6e-148 |
| Q9M9E4 F3F9.22 | 1361 | 6e-148 |
| B9RJL3 Protein binding protein, putative | 909 | 2e-095 |
| A5AKV2 Putative uncharacterized protein | 907 | 3e-095 |
| B9GUX0 Predicted protein | 885 | 1e-092 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78230.1 protein binding | 1758 | 3e-196 |
| AT4G03260.1 leucine-rich repeat family protein | 598 | 1e-061 |
| AT4G03260.2 leucine-rich repeat family protein | 598 | 1e-061 |
| AT1G78240.1 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 313 | 1e-028 |
| AT1G78240.2 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 313 | 1e-028 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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