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Information for unigene UN18192

FASTA Sequence
Unigene ID: UN18192Length: 1270 SSR 
GGATCTGTGACCCTCTTTGTCTCTTTCTAACAGAACAGAACATCGAACAAGGTATCTCCAGACATCATAGATTTCATCGAATGTTC
TTCTTCTTTAAATTTTGATTTGGTTAAAAAGTCATTAAAACTGGAAAAATAGTACGGAGAAGGTAGAAGAAGAAGAAGAAGGAGAT
GGACCTACTACACCTACAGGAGGCTACTACTACTACTAGTACTGCTTGAATCTTTGGATGGTCACTTTCAATGACTCTTGCTGTCC
AGTGTGGGTTCCCCTGTTTCCTCTCACCCCTGACCCCATCTACTAATCACTCTTTCCAACTTGCTCTCTTATGAGAGAGAGAGAGA
AACCTCATCTTTCAAATTTTTGATTATTTTCACTTTTACAGTCTATGAGAGAGAGAAGAAGCTCAGATTGTTTGTCAACAAGATTT
AGATTTGTGGAGCTCAAGTAGATCACAGATCTTCTGTTCATATGAAGAGATCTTTCCTTCTCTGGTATGTGCTCCTGGTACAAGCA
TTCTATGGTGCTTGGTACAATGTTGGAGGAAGCCTGCATTGTGAATATTCAAATTCAGTTATTCTTCACCGGCCTCACAGCGTATC
GATCACAGAGTTTGGAGCGGTTGGAGATGGTGTCACTCTAAACACTAAAGCCTTTCAGAATGCTTTGTTCTACCTCAACTCTTTCT
CTGATAAAGGTGGTGCCAAGCTTTTTGTTCCCGCCGGTCAGTGGCTTACCGGTAGTTTCGACCTTATCAGCCACCTAACGTTATGG
CTAGACAAGGGTGCCACCATTCTTGGCTCCACGAGCTCCGAGAATTGGCCTGTGGTTGATCCATTACCATCATATGGATGAGGAAG
AGAGTTGCCTGGTAGAAGACACAGGAGTCTTATATATGGTCAGAACCTCACTGATGTAGTCATAACAGGTGAGAACGGGACAATTG
ATGGTCAAGGAAGTGTATGGTGGGATTGGTTTAGAAATGGAGGGCTAAACTATACAAGACCTCATCTTGTTGAGCTCATAAACACT
ACTGGTCTTATCATCTCCAACCTCACCTTCTTGAATTCACCTTTTTGGAACATTCATCCTGTTTATTGCAGAGATGTTGTTGTAAA
GAATCTCACAATCTTGGCTCCTCTTGACTCTCCAAATACAGATGGAGTTGATCCAGATTCATCAACTGATGTTTGCATAGAGGATT
GTTACATAGTTACTGGAGATGATTTAGTATCTATAAAAGTGGATGGGATGAGTATGGATATCCTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002876663 glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]13071e-141
NP_567126 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]13042e-141
XP_002875985 glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]12773e-138
XP_002301554 predicted protein [Populus trichocarpa]10892e-116
XP_002320934 predicted protein [Populus trichocarpa]10784e-115

Swiss-Prot top hits (Blast detail)Scoree value
A7PZL3 Probable polygalacturonase7384e-077
Q9LW07 Probable polygalacturonase At3g157202099e-016
Q7M1E7 Polygalacturonase1821e-012
Q8RY29 Polygalacturonase ADPG21741e-011
Q9FY19 Polygalacturonase1676e-011

TrEMBL top hits (Blast detail)Scoree value
Q9FPJ2 AT3g6211013041e-141
B9GTA2 Predicted protein10891e-116
B9I9A6 Predicted protein (Fragment)10782e-115
B9TA63 Polygalacturonase, putative10541e-112
C6TAH6 Putative uncharacterized protein9922e-105

Arabidopsis top hits (Blast detail)Scoree value
AT3G62110.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein13048e-144
AT3G16850.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein7724e-082
AT4G33440.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein7662e-081
AT3G61490.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein7322e-077
AT3G61490.2 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein7322e-077

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  67%
 
71  33%

Unigene MembersMember information